Browse Element(s) Details


OsAffx.26011.1.S1_at

Description tigr:9632.m01174
TID=OsAffx.26011.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1299011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12950Os.28875.2.A1_x_at11/114+7118386..7131985Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12960Os.16198.1.S1_at11/114+7133541..7135788UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g12970Os.6101.1.S1_at11/114+7136658..7139646Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12970Os.39636.1.A1_x_at2/114+7136658..7139646Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12970Os.28875.2.A1_x_at2/114+7136658..7139646Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12980Os.14583.1.S1_at11/114+7143586..7146224Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12990OsAffx.26011.1.S1_at11/114+7146697..7148291F-box domain containing protein
LOC_Os04g13000OsAffx.7046.1.S1_at7/114+7150545..7154748retrotransposon protein, putative, LINE subclass
LOC_Os04g13010OsAffx.26012.1.S1_at11/114+7157534..7158379F-box domain containing protein
LOC_Os04g13020NANA4+7160118..7163087retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13030Os.10703.2.S1_x_at1/114+7163405..7169503retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13040OsAffx.3780.1.S1_at11/114+7170107..7171009F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26011.1.S1_at--1157--8991Chr04:7147678..7147702 (25 bp)
TGAAGGAGATCGTCTCCAGCACGAT
LOC_Os04g12990
OsAffx.26011.1.S1_at--714--6071Chr04:7147650..7147674 (25 bp)
GAGTTTGGCCATTGTTGACTGCAGA
LOC_Os04g12990
OsAffx.26011.1.S1_at--329--5331Chr04:7147627..7147651 (25 bp)
GAAGTGGGCACCATACTGATGCATT
LOC_Os04g12990
OsAffx.26011.1.S1_at--404--2971Chr04:7147593..7147617 (25 bp)
AATGGATTCCCTCGTTGAAGCATCG
LOC_Os04g12990
OsAffx.26011.1.S1_at--431--7511Chr04:7147564..7147588 (25 bp)
GTGGAACACGTTTCGGATCCGACTT
LOC_Os04g12990
OsAffx.26011.1.S1_at--1042--5691Chr04:7147544..7147568 (25 bp)
GACTTTGACAAGACGACATCCACTT
LOC_Os04g12990
OsAffx.26011.1.S1_at--646--2051Chr04:7147491..7147515 (25 bp)
ACTTAATGTGTCGTGGTTTCAGCCA
LOC_Os04g12990
OsAffx.26011.1.S1_at--144--2511Chr04:7147097..7147121 (25 bp)
AACATTTCACGAGCTCACTACATTG
LOC_Os04g12990
OsAffx.26011.1.S1_at--557--1212Chr04:7147027..7147051 (25 bp)
AGTTTTCTGCAGAACACTCCTAACC
LOC_Os04g12990
OsAffx.26011.1.S1_at--300--5431Chr04:7146838..7146862 (25 bp)
GAACCAGATTCATTCCAAGCGCAGA
LOC_Os04g12990
OsAffx.26011.1.S1_at--1074--5832Chr04:7146744..7146768 (25 bp)
GACCTTATTGAACTTTTGTTGCGCA
LOC_Os04g12990
Target Sequence 
TGAAGGAGATCGTCTCCAGCACGATCAAGAGTTTGGCCATTGTTGACTGCAGAAGTGGGCACCATACTGATGCATTGGTT
TGTCGAATGGATTCCCTCGTTGAAGCATCGATTAGTGGAACACGTTTCGGATCCGACTTTGACAAGACGACATCCACTTT
AATAGGCAGTCTAATCAACGTGAGGGAACTTAATGTGTCGTGGTTTCAGCCAGTGGAGTTGAAATATGGTGAATCTGCGA
ACTTTCAAACATTTCACGAGCTCACTACATTGAACATATATGAATGTGATCTGGGTCAAAATTTACATATATTGCTGAGT
TTTCTGCAGAACACTCCTAACCTCAAGAAAGTTATATTGCAGAACTGCGAGATTTCAGGTCATTCGAGAAAGAGGAAAAG
AACACCCAGGGCAAACAGGAACCAGATTCATTCCAAGCGCAGAAGTCTGATAACTTCCAAGTCTGAGATCTCGAAGATAA
TGAAGATGACATATGAAGATGACGGTGTCAGTGACCTTATTGAACTTTTGTTGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis