Browse Element(s) Details


OsAffx.26012.1.S1_at

Description tigr:9632.m01176
TID=OsAffx.26012.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1301011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12960Os.16198.1.S1_at11/114+7133541..7135788UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g12970Os.6101.1.S1_at11/114+7136658..7139646Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12970Os.39636.1.A1_x_at2/114+7136658..7139646Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12970Os.28875.2.A1_x_at2/114+7136658..7139646Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12980Os.14583.1.S1_at11/114+7143586..7146224Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12990OsAffx.26011.1.S1_at11/114+7146697..7148291F-box domain containing protein
LOC_Os04g13000OsAffx.7046.1.S1_at7/114+7150545..7154748retrotransposon protein, putative, LINE subclass
LOC_Os04g13010OsAffx.26012.1.S1_at11/114+7157534..7158379F-box domain containing protein
LOC_Os04g13020NANA4+7160118..7163087retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13030Os.10703.2.S1_x_at1/114+7163405..7169503retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13040OsAffx.3780.1.S1_at11/114+7170107..7171009F-box domain containing protein
LOC_Os04g13050OsAffx.26013.1.S1_at11/114+7174762..7180150hypothetical protein
LOC_Os04g13050Os.37083.1.S1_at1/114+7174762..7180150hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26012.1.S1_at--308--6151Chr04:7158039..7158063 (25 bp)
GAGGTGTACAGCAACGCGACATCAA
LOC_Os04g13010
OsAffx.26012.1.S1_at--527--2151Chr04:7158005..7158029 (25 bp)
ACAGCCCGACGTGCGACAGATCGAG
LOC_Os04g13010
OsAffx.26012.1.S1_at--498--4331Chr04:7157928..7157952 (25 bp)
CCATCGGCGTTGGTTATGACCTCAA
LOC_Os04g13010
OsAffx.26012.1.S1_at--483--5731Chr04:7157868..7157892 (25 bp)
GACTGAAATCATTGCGTCTCTCTCG
LOC_Os04g13010
OsAffx.26012.1.S1_at--508--9371Chr04:7157754..7157778 (25 bp)
TCGACGAGATCACTGGCAATGCGCT
LOC_Os04g13010
OsAffx.26012.1.S1_at--467--611Chr04:7157736..7157760 (25 bp)
ATGCGCTCAGGAGTTTGGCCATTGA
LOC_Os04g13010
OsAffx.26012.1.S1_at--72--651Chr04:7157676..7157700 (25 bp)
ATGCATTGTGTGTCACGGCGCCAAA
LOC_Os04g13010
OsAffx.26012.1.S1_at--969--4171Chr04:7157643..7157667 (25 bp)
CCCTTCGGCTCAAGTTTTCGATACA
LOC_Os04g13010
OsAffx.26012.1.S1_at--546--3391Chr04:7157612..7157636 (25 bp)
CAGCGTGTTTTTGGTTGATCGAATG
LOC_Os04g13010
OsAffx.26012.1.S1_at--110--5291Chr04:7157592..7157616 (25 bp)
GAATGGGTTTCCTCGTTGATGCGTC
LOC_Os04g13010
OsAffx.26012.1.S1_at--571--6331Chr04:7157575..7157599 (25 bp)
GATGCGTCGATCTGTAAAATGTTTT
LOC_Os04g13010
Target Sequence 
GAGGTGTACAGCAACGCGACATCAAATCACACTCACAGCCCGACGTGCGACAGATCGAGCGATGGATCAACCGCGGCGTC
CGGTTCTACCGACCCGTCGAGCTCGAGATCACCATCGGCGTTGGTTATGACCTCAAGCTTCCAATCCTCGGCGCCGTCGT
CTTCTCCCACCGACTGAAATCATTGCGTCTCTCTCGCCTTGTTCTGGACCGCGGCTTCGGCTACACCATCCGTTCGTGGT
GCCCGGTCTTGGAAGCCATGGAGCTCAACTCCTGCATCTTCGAGTTCGACGAGATCACTGGCAATGCGCTCAGGAGTTTG
GCCATTGATGGCTGCTCCCGACGTGGTCTGCAGGTGCCTGATGATGCATTGTGTGTCACGGCGCCAAAGCTTACCTCCCT
TCGGCTCAAGTTTTCGATACATGATTTCAGCGTGTTTTTGGTTGATCGAATGGGTTTCCTCGTTGATGCGTCGATCTGTA
AAATGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis