Browse Element(s) Details


Os.28875.2.A1_x_at

Description gb:AK110950.1
DB_XREF= gi:32996159
TID=Os.28875.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28875 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-H12, full insert sequence.
FL= gb:AK110950.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1295011/11Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g126786/11Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g129702/11Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g127201/11Indole-3-acetate beta-glucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12864OsAffx.25367.1.S1_at1/114+7091153..7094846retrotransposon, putative, centromere-specific
LOC_Os04g12880OsAffx.5986.2.A1_at5/114+7096848..7100159retrotransposon protein, putative, unclassified
LOC_Os04g12890Os.40360.1.S1_x_at1/114+7101475..7105484hypothetical protein
LOC_Os04g12900Os.14583.1.S1_at4/114+7108528..7110733Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12920Os.26032.1.S1_at2/114+7117054..7117489expressed protein
LOC_Os04g12950Os.28875.2.A1_x_at11/114+7118386..7131985Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12960Os.16198.1.S1_at11/114+7133541..7135788UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g12970Os.6101.1.S1_at11/114+7136658..7139646Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12970Os.39636.1.A1_x_at2/114+7136658..7139646Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12970Os.28875.2.A1_x_at2/114+7136658..7139646Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12980Os.14583.1.S1_at11/114+7143586..7146224Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12990OsAffx.26011.1.S1_at11/114+7146697..7148291F-box domain containing protein
LOC_Os04g13000OsAffx.7046.1.S1_at7/114+7150545..7154748retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28875.2.A1_x_at--232--8811Chr04:7131057..7131081 (25 bp)
TGTTGCCGTCGTTCTATATCGGCGA
LOC_Os04g12950
Os.28875.2.A1_x_at--479--6992Chr04:7131008..7131032 (25 bp)
GTACGGGTTCAACCTCTTCACGAGC
LOC_Os04g12950
Os.28875.2.A1_x_at--166--1512Chr04:7130986..7131010 (25 bp)
AGCACCGTGCCGTGCATGGAATGGC
LOC_Os04g12950
Os.28875.2.A1_x_at--1053--3792Chr04:7130946..7130970 (25 bp)
CTCGCTCTGTCGTGTTTGTGTCGTA
LOC_Os04g12950
Os.28875.2.A1_x_at--600--6891Chr04:7130924..7130948 (25 bp)
GTATGGGACTTTCTCCAGCTACGAC
LOC_Os04g12950
Os.28875.2.A1_x_at--564--7192Chr04:7130881..7130905 (25 bp)
GTCGGCAATGGCCTTTGCAATTCAG
LOC_Os04g12950
Os.28875.2.A1_x_at--453--8232Chr04:7130857..7130881 (25 bp)
GGCAAGCCATTCCTTTGGGTTGTGA
LOC_Os04g12950
Os.28875.2.A1_x_at--278--6013Chr04:7130780..7130804 (25 bp)
GAGAGGACTAATTGTTCCCTTTTGT
LOC_Os04g12950
Os.28875.2.A1_x_at--831--10391Chr04:7130761..7130785 (25 bp)
TTTTGTCCCCAGCTGGAGGTGCTTG
LOC_Os04g12950
Os.28875.2.A1_x_at--305--6153Chr04:7137512..7137536 (25 bp)
GAGGTGCTTGCTCACAAGGCCACAG
LOC_Os04g12970
Os.28875.2.A1_x_at--435--2931Chr04:7130731..7130755 (25 bp)
AAGGCCACAGGTATGGGAACCAACA
LOC_Os04g12950
Target Sequence 
TGTTGCCGTCGTTCTATATCGGCGACGGCCCGCTGCCGTCGAACACGGCGTACGGGTTCAACCTCTTCACGAGCACCGTG
CCGTGCATGGAATGGCTGGACAAGCAGCCTCCTCGCTCTGTCGTGTTTGTGTCGTATGGGACTTTCTCCAGCTACGACGC
AGCCAAGCTCGAGGAGGTCGGCAATGGCCTTTGCAATTCAGGCAAGCCATTCCTTTGGGTTGTGAGGTCCAATGAGGAGC
ACAAGTTATCTCGAGAACTTCGAGAGAAGTGTGGGAAGAGAGGACTAATTGTTCCCTTTTGTCCCCAGCTGGAGGTGCTT
GCTCACAAGGCCACAGGTATGGGAACCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28875.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis