Browse Element(s) Details


Os.54954.1.S1_at

Description gb:AK107177.1
DB_XREF= gi:32992386
TID=Os.54954.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54954 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-G10, full insert sequence.
FL= gb:AK107177.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1274411/11expressed protein
LOC_Os08g220041/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12669OsAffx.13792.1.S1_at11/114+6994181..7001007hypothetical protein
LOC_Os04g12669OsAffx.17138.1.S1_at4/114+6994181..7001007hypothetical protein
LOC_Os04g12669Os.38884.1.S1_at1/114+6994181..7001007hypothetical protein
LOC_Os04g12669Os.39636.1.A1_x_at1/114+6994181..7001007hypothetical protein
LOC_Os04g12678Os.28875.2.A1_x_at6/114+7001375..7002638Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12690Os.16198.1.S1_at6/114+7004639..7006505Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12690Os.34112.1.S1_at2/114+7004639..7006505Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12690Os.30989.1.S1_at1/114+7004639..7006505Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12700Os.34112.1.S1_at3/114+7006789..7007598retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12710NANA4+7008169..7008786Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12720Os.39636.1.A1_x_at11/114+7011055..7013322Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12720Os.6101.1.S1_at2/114+7011055..7013322Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12720Os.28875.2.A1_x_at1/114+7011055..7013322Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12730OsAffx.31174.5.S1_x_at5/114+7015941..7020480hypothetical protein
LOC_Os04g12730OsAffx.31174.4.S1_x_at5/114+7015941..7020480hypothetical protein
LOC_Os04g12730Os.52765.1.S1_at5/114+7015941..7020480hypothetical protein
LOC_Os04g12744OsAffx.26006.1.S1_at11/114+7023883..7027836expressed protein
LOC_Os04g12744Os.54954.1.S1_at11/114+7023883..7027836expressed protein
LOC_Os04g12744Os.54954.1.S1_x_at11/114+7023883..7027836expressed protein
LOC_Os04g12760NANA4+7037021..7042985retrotransposon protein, putative, unclassified
LOC_Os04g12770Os.28943.1.S1_x_at3/114+7043607..7047000retrotransposon protein, putative, unclassified
LOC_Os04g12770OsAffx.29322.1.S1_x_at1/114+7043607..7047000retrotransposon protein, putative, unclassified
LOC_Os04g12780NANA4+7048782..7050014retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54954.1.S1_at--233--6172Chr04:28890606..28890933 (25 bp)
GAGGATAAGGTATTTGGAGGATCAA
NONE
Os.54954.1.S1_at--579--7954Chr04:8303227..8303286 (25 bp)
GGATCAAATATGGATGAGCTGCTAG
NONE
Os.54954.1.S1_at--313--274Chr08:13188996..13189042 (25 bp)
ATATGGATGAGCTGCTAGGGATGCT
NONE
Os.54954.1.S1_at--155--1611Chr04:7025404..7025428 (25 bp)
AGCTGCTAGGGATGCTCTAATTGCC
LOC_Os04g12744
Os.54954.1.S1_at--447--4871Chr04:7025400..7025424 (25 bp)
GCTAGGGATGCTCTAATTGCCCACT
LOC_Os04g12744
Os.54954.1.S1_at--99--10091Chr04:7025398..7025422 (25 bp)
TAGGGATGCTCTAATTGCCCACTTC
LOC_Os04g12744
Os.54954.1.S1_at--1028--7651Chr04:7025396..7025420 (25 bp)
GGGATGCTCTAATTGCCCACTTCTT
LOC_Os04g12744
Os.54954.1.S1_at--933--6331Chr04:7025394..7025418 (25 bp)
GATGCTCTAATTGCCCACTTCTTCT
LOC_Os04g12744
Os.54954.1.S1_at--96--4691Chr04:7025368..7025392 (25 bp)
GCTCCTAAACCCACTGCAATTGTGT
LOC_Os04g12744
Os.54954.1.S1_at--273--9831Chr04:7025363..7025387 (25 bp)
TAAACCCACTGCAATTGTGTGGCTG
LOC_Os04g12744
Os.54954.1.S1_at--629--2611Chr04:7025361..7025385 (25 bp)
AACCCACTGCAATTGTGTGGCTGGG
LOC_Os04g12744
Target Sequence 
GAGGATAAGGTATTTGGAGGATCAAATATGGATGAGCTGCTAGGGATGCTCTAATTGCCCACTTCTTCTCGCTCCTAAAC
CCACTGCAATTGTGTGGCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis