Browse Element(s) Details


OsAffx.13792.1.S1_at

Description tigr:9632.m01142
TID=OsAffx.13792.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1266911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12620OsAffx.26003.1.S1_at7/114+6974186..6975143hypothetical protein
LOC_Os04g12639OsAffx.13790.1.S1_at11/114+6976706..6985471carboxyl-terminal proteinase, putative, expressed
LOC_Os04g12639OsAffx.3778.1.S1_at11/114+6976706..6985471carboxyl-terminal proteinase, putative, expressed
LOC_Os04g12639OsAffx.13790.1.S1_s_at11/114+6976706..6985471carboxyl-terminal proteinase, putative, expressed
LOC_Os04g12639Os.53629.1.S1_x_at2/114+6976706..6985471carboxyl-terminal proteinase, putative, expressed
LOC_Os04g12660OsAffx.13794.1.S1_s_at11/114+6988798..6989927Vignain precursor, putative
LOC_Os04g12669OsAffx.13792.1.S1_at11/114+6994181..7001007hypothetical protein
LOC_Os04g12669OsAffx.17138.1.S1_at4/114+6994181..7001007hypothetical protein
LOC_Os04g12669Os.38884.1.S1_at1/114+6994181..7001007hypothetical protein
LOC_Os04g12669Os.39636.1.A1_x_at1/114+6994181..7001007hypothetical protein
LOC_Os04g12678Os.28875.2.A1_x_at6/114+7001375..7002638Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12690Os.16198.1.S1_at6/114+7004639..7006505Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12690Os.34112.1.S1_at2/114+7004639..7006505Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12690Os.30989.1.S1_at1/114+7004639..7006505Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12700Os.34112.1.S1_at3/114+7006789..7007598retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12710NANA4+7008169..7008786Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12720Os.39636.1.A1_x_at11/114+7011055..7013322Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12720Os.6101.1.S1_at2/114+7011055..7013322Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12720Os.28875.2.A1_x_at1/114+7011055..7013322Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12730OsAffx.31174.5.S1_x_at5/114+7015941..7020480hypothetical protein
LOC_Os04g12730OsAffx.31174.4.S1_x_at5/114+7015941..7020480hypothetical protein
LOC_Os04g12730Os.52765.1.S1_at5/114+7015941..7020480hypothetical protein
LOC_Os04g12744OsAffx.26006.1.S1_at11/114+7023883..7027836expressed protein
LOC_Os04g12744Os.54954.1.S1_at11/114+7023883..7027836expressed protein
LOC_Os04g12744Os.54954.1.S1_x_at11/114+7023883..7027836expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13792.1.S1_at--1056--936Chr08:14382537..14382561 (25 bp)
AGGAAATCCAGGGTCTTCGTGGCTT
NONE
OsAffx.13792.1.S1_at--268--8491Chr04:6994410..6994434 (25 bp)
TGGCTTCCCGACTTCATGAGTTGAT
LOC_Os04g12669
OsAffx.13792.1.S1_at--691--2672Chr08:24880783..24880807 (25 bp)
AAGCGAAGCGTCACTCTTTGTACTT
NONE
OsAffx.13792.1.S1_at--1127--6991Chr04:6994361..6994385 (25 bp)
GTACTTCTGCCGTCTTGGTAAGCAA
LOC_Os04g12669
OsAffx.13792.1.S1_at--1157--2571Chr04:6994338..6994362 (25 bp)
AACGGGCTCAGCTGACAGTCTTTGG
LOC_Os04g12669
OsAffx.13792.1.S1_at--951--1151Chr04:6994322..6994346 (25 bp)
AGTCTTTGGGCACATGATCCATCCT
LOC_Os04g12669
OsAffx.13792.1.S1_at--1013--6351Chr04:6994307..6994331 (25 bp)
GATCCATCCTTTCGCAGAGGAAGCA
LOC_Os04g12669
OsAffx.13792.1.S1_at--543--1051Chr04:6994283..6994307 (25 bp)
AGGTGATCTTCGTAGTTGGGCATTC
LOC_Os04g12669
OsAffx.13792.1.S1_at--838--10831Chr04:6994268..6994292 (25 bp)
TTGGGCATTCTTCAACTGGATGGTC
LOC_Os04g12669
OsAffx.13792.1.S1_at--94--3271Chr04:6994256..6994280 (25 bp)
CAACTGGATGGTCTTGGTCGCAATA
LOC_Os04g12669
OsAffx.13792.1.S1_at--489--10471Chr04:6994212..6994236 (25 bp)
TTACTACCATAGTGTCCTATCTCTC
LOC_Os04g12669
Target Sequence 
AGGAAATCCAGGGTCTTCGTGGCTTCCCGACTTCATGAGTTGATGAGCGAAGCGAAGCGTCACTCTTTGTACTTCTGCCG
TCTTGGTAAGCAACGGGCTCAGCTGACAGTCTTTGGGCACATGATCCATCCTTTCGCAGAGGAAGCAGGTGATCTTCGTA
GTTGGGCATTCTTCAACTGGATGGTCTTGGTCGCAATAGGGGCATTGAGTAACGCAATTACTACCATAGTGTCCTATCTC
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis