Browse Element(s) Details


OsAffx.3778.1.S1_at

Description tigr:9632.m01140
TID=OsAffx.3778.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1263911/11carboxyl-terminal proteinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12589NANA4+6952647..6953046hypothetical protein
LOC_Os04g12600NANA4+6956674..6959088D-mannose binding lectin family protein, expressed
LOC_Os04g12610NANA4+6962324..6968403retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12620OsAffx.26003.1.S1_at7/114+6974186..6975143hypothetical protein
LOC_Os04g12639OsAffx.13790.1.S1_at11/114+6976706..6985471carboxyl-terminal proteinase, putative, expressed
LOC_Os04g12639OsAffx.3778.1.S1_at11/114+6976706..6985471carboxyl-terminal proteinase, putative, expressed
LOC_Os04g12639OsAffx.13790.1.S1_s_at11/114+6976706..6985471carboxyl-terminal proteinase, putative, expressed
LOC_Os04g12639Os.53629.1.S1_x_at2/114+6976706..6985471carboxyl-terminal proteinase, putative, expressed
LOC_Os04g12660OsAffx.13794.1.S1_s_at11/114+6988798..6989927Vignain precursor, putative
LOC_Os04g12669OsAffx.13792.1.S1_at11/114+6994181..7001007hypothetical protein
LOC_Os04g12669OsAffx.17138.1.S1_at4/114+6994181..7001007hypothetical protein
LOC_Os04g12669Os.38884.1.S1_at1/114+6994181..7001007hypothetical protein
LOC_Os04g12669Os.39636.1.A1_x_at1/114+6994181..7001007hypothetical protein
LOC_Os04g12678Os.28875.2.A1_x_at6/114+7001375..7002638Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12690Os.16198.1.S1_at6/114+7004639..7006505Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12690Os.34112.1.S1_at2/114+7004639..7006505Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12690Os.30989.1.S1_at1/114+7004639..7006505Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12700Os.34112.1.S1_at3/114+7006789..7007598retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12710NANA4+7008169..7008786Indole-3-acetate beta-glucosyltransferase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3778.1.S1_at--323--9611Chr04:6984443..6984467 (25 bp)
TCATCATCAGACACTATAGCGACAG
LOC_Os04g12639
OsAffx.3778.1.S1_at--1094--9991Chr04:6984427..6984451 (25 bp)
TAGCGACAGAAGCTCATCTGCCTAC
LOC_Os04g12639
OsAffx.3778.1.S1_at--477--9191Chr04:6984409..6984433 (25 bp)
TGCCTACCATTGCATGCCCAAAGGG
LOC_Os04g12639
OsAffx.3778.1.S1_at--806--9031Chr04:6984395..6984419 (25 bp)
TGCCCAAAGGGAACAATACCATTGT
LOC_Os04g12639
OsAffx.3778.1.S1_at--138--7051Chr04:6984361..6984385 (25 bp)
GTAAAGCTGATCTGAAGACACAATT
LOC_Os04g12639
OsAffx.3778.1.S1_at--305--5631Chr04:6984345..6984369 (25 bp)
GACACAATTTAGTTTTGATCCAATC
LOC_Os04g12639
OsAffx.3778.1.S1_at--709--491Chr04:6984323..6984347 (25 bp)
ATCGGTAATACCCATCATCGTGGAG
LOC_Os04g12639
OsAffx.3778.1.S1_at--178--6671Chr04:6983382..6983406 (25 bp)
GTTGCAATCAATGTCTATGAGCCAA
LOC_Os04g12639
OsAffx.3778.1.S1_at--402--10131Chr04:6983367..6983391 (25 bp)
TATGAGCCAAAAGTGCGAGGACAAA
LOC_Os04g12639
OsAffx.3778.1.S1_at--1100--7031Chr04:6983313..6983337 (25 bp)
GTAAACGGACCTACTGGAAATTATG
LOC_Os04g12639
OsAffx.3778.1.S1_at--603--8211Chr04:6983286..6983310 (25 bp)
GGAATCGGTGCTGGTTCTATTGTAA
LOC_Os04g12639
Target Sequence 
TCATCATCAGACACTATAGCGACAGAAGCTCATCTGCCTACCATTGCATGCCCAAAGGGAACAATACCATTGTTACAAAA
TAGTAAAGCTGATCTGAAGACACAATTTAGTTTTGATCCAATCGGTAATACCCATCATCGTGGAGGGGAGAGAGCTGGGT
GTACAACATATGATGAAATATATGGAACACAAGTTGCAATCAATGTCTATGAGCCAAAAGTGCGAGGACAAAATGATCTT
AGTGCATCATGGGCATTAATGGTAAACGGACCTACTGGAAATTATGAGGGAATCGGTGCTGGTTCTATTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis