Browse Element(s) Details


OsAffx.13794.1.S1_s_at

Description tigr:9632.m01168
TID=OsAffx.13794.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Papain family cysteine protease, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1266011/11Vignain precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12610NANA4+6962324..6968403retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12620OsAffx.26003.1.S1_at7/114+6974186..6975143hypothetical protein
LOC_Os04g12639OsAffx.13790.1.S1_at11/114+6976706..6985471carboxyl-terminal proteinase, putative, expressed
LOC_Os04g12639OsAffx.3778.1.S1_at11/114+6976706..6985471carboxyl-terminal proteinase, putative, expressed
LOC_Os04g12639OsAffx.13790.1.S1_s_at11/114+6976706..6985471carboxyl-terminal proteinase, putative, expressed
LOC_Os04g12639Os.53629.1.S1_x_at2/114+6976706..6985471carboxyl-terminal proteinase, putative, expressed
LOC_Os04g12660OsAffx.13794.1.S1_s_at11/114+6988798..6989927Vignain precursor, putative
LOC_Os04g12669OsAffx.13792.1.S1_at11/114+6994181..7001007hypothetical protein
LOC_Os04g12669OsAffx.17138.1.S1_at4/114+6994181..7001007hypothetical protein
LOC_Os04g12669Os.38884.1.S1_at1/114+6994181..7001007hypothetical protein
LOC_Os04g12669Os.39636.1.A1_x_at1/114+6994181..7001007hypothetical protein
LOC_Os04g12678Os.28875.2.A1_x_at6/114+7001375..7002638Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12690Os.16198.1.S1_at6/114+7004639..7006505Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12690Os.34112.1.S1_at2/114+7004639..7006505Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12690Os.30989.1.S1_at1/114+7004639..7006505Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12700Os.34112.1.S1_at3/114+7006789..7007598retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12710NANA4+7008169..7008786Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os04g12720Os.39636.1.A1_x_at11/114+7011055..7013322Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12720Os.6101.1.S1_at2/114+7011055..7013322Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os04g12720Os.28875.2.A1_x_at1/114+7011055..7013322Indole-3-acetate beta-glucosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0007568biological_processaging
GO:0009723biological_processresponse to ethylene stimulus
GO:0010150biological_processleaf senescence
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13794.1.S1_s_at--168--3212Chr04:7121639..7122009 (25 bp)
CAATGTGGTTGTTGTTGGGCGTTTT
NONE
OsAffx.13794.1.S1_s_at--527--4932Chr04:7122080..7122104 (25 bp)
GCTTGTTGACTGTGATGTCCATGGT
NONE
OsAffx.13794.1.S1_s_at--479--2792Chr04:7122219..7122243 (25 bp)
AAGAGTGTATCCAACAGCGTCGCAT
NONE
OsAffx.13794.1.S1_s_at--769--4652Chr04:7122235..7122259 (25 bp)
GCGTCGCATCGATCAAGGGCTATGA
NONE
OsAffx.13794.1.S1_s_at--56--712Chr04:7122277..7122301 (25 bp)
ATGAGGCTGCCCTTATGAAGGCGGT
NONE
OsAffx.13794.1.S1_s_at--642--5292Chr04:7122293..7122317 (25 bp)
GAAGGCGGTGGCTAACCAACCTGTG
NONE
OsAffx.13794.1.S1_s_at--684--8492Chr04:7122301..7122325 (25 bp)
TGGCTAACCAACCTGTGTCTGTGGC
NONE
OsAffx.13794.1.S1_s_at--701--2072Chr04:7122345..7122369 (25 bp)
ACATTCCAGTTCTACAAAGGTGGTG
NONE
OsAffx.13794.1.S1_s_at--1024--3272Chr04:7122359..7122383 (25 bp)
CAAAGGTGGTGTGATGACCGGCTCA
NONE
OsAffx.13794.1.S1_s_at--221--792Chr04:7122383..7122407 (25 bp)
ATGTGGCACTGACTTGGACCATGGT
NONE
OsAffx.13794.1.S1_s_at--934--5672Chr04:7122393..7122417 (25 bp)
GACTTGGACCATGGTATTGTGGCCA
NONE
Target Sequence 
CAATGTGGTTGTTGTTGGGCGTTTTCGGCCGTGGCAGCCATGGAAGGTATTGTCAAGCTGAGCACGGGCAAACTTATCTC
ACTCTCTGAACAAGAGCTTGTTGACTGTGATGTCCATGGTGAGGACCAGGGCTGCGAAGGTGGGCTCATGGATGACGCCT
TCAAATTCATCATCAAGAATGGCGGCCTCACCACCGAGTCTAACTACCCATACGCAGCAGCAGACGACAAGTGCAAGAGT
GTATCCAACAGCGTCGCATCGATCAAGGGCTATGAGGATGTGCCAGCCAACAATGAGGCTGCCCTTATGAAGGCGGTGGC
TAACCAACCTGTGTCTGTGGCTGTCGATGGAGGCGACATGACATTCCAGTTCTACAAAGGTGGTGTGATGACCGGCTCAT
GTGGCACTGACTTGGACCATGGTATTGTGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13794.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis