Browse Element(s) Details


OsAffx.26003.1.S1_at

Description tigr:9632.m01137
TID=OsAffx.26003.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g126207/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12589NANA4+6952647..6953046hypothetical protein
LOC_Os04g12600NANA4+6956674..6959088D-mannose binding lectin family protein, expressed
LOC_Os04g12610NANA4+6962324..6968403retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12620OsAffx.26003.1.S1_at7/114+6974186..6975143hypothetical protein
LOC_Os04g12639OsAffx.13790.1.S1_at11/114+6976706..6985471carboxyl-terminal proteinase, putative, expressed
LOC_Os04g12639OsAffx.3778.1.S1_at11/114+6976706..6985471carboxyl-terminal proteinase, putative, expressed
LOC_Os04g12639OsAffx.13790.1.S1_s_at11/114+6976706..6985471carboxyl-terminal proteinase, putative, expressed
LOC_Os04g12639Os.53629.1.S1_x_at2/114+6976706..6985471carboxyl-terminal proteinase, putative, expressed
LOC_Os04g12660OsAffx.13794.1.S1_s_at11/114+6988798..6989927Vignain precursor, putative
LOC_Os04g12669OsAffx.13792.1.S1_at11/114+6994181..7001007hypothetical protein
LOC_Os04g12669OsAffx.17138.1.S1_at4/114+6994181..7001007hypothetical protein
LOC_Os04g12669Os.38884.1.S1_at1/114+6994181..7001007hypothetical protein
LOC_Os04g12669Os.39636.1.A1_x_at1/114+6994181..7001007hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26003.1.S1_at--459--4731Chr04:6975021..6975045 (25 bp)
GCTGTGGCGGGCGTCGCCAGAACTG
LOC_Os04g12620
OsAffx.26003.1.S1_at--57--4411NONE
GCCAGAACTGGTTGTGGGCGACCTT
NONE
OsAffx.26003.1.S1_at--721--3771NONE
CCAGAACTGGTTGTGGGCGACCTTC
NONE
OsAffx.26003.1.S1_at--971--3411NONE
CAGAACTGGTTGTGGGCGACCTTCG
NONE
OsAffx.26003.1.S1_at--483--1431NONE
AGAACTGGTTGTGGGCGACCTTCGC
NONE
OsAffx.26003.1.S1_at--886--8572Chr09:13119521..13119540 (20 bp)
TGGTTGTGGGCGACCTTCGCTCTTT
NONE
OsAffx.26003.1.S1_at--378--6632Chr09:13119521..13119542 (22 bp)
GTTGTGGGCGACCTTCGCTCTTTGT
NONE
OsAffx.26003.1.S1_at--705--10812Chr09:13119521..13119543 (23 bp)
TTGTGGGCGACCTTCGCTCTTTGTT
NONE
OsAffx.26003.1.S1_at--98--7492Chr09:13119521..13119545 (25 bp)
GTGGGCGACCTTCGCTCTTTGTTTG
NONE
OsAffx.26003.1.S1_at--845--3671Chr04:6974244..6974268 (25 bp)
CTTTGTTTGATTTTACTAGGTGGAG
LOC_Os04g12620
OsAffx.26003.1.S1_at--761--10251Chr04:6974243..6974267 (25 bp)
TTTGTTTGATTTTACTAGGTGGAGT
LOC_Os04g12620
Target Sequence 
GCTGTGGCGGGCGTCGCCAGAACTGGTTGTGGGCGACCTTCGCTCTTTGTTTGATTTTACTAGGTGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis