Browse Element(s) Details


Os.26062.1.S1_a_at

Description gb:AB091673.1
DB_XREF= gi:29467453
GEN=OsSUT4
TID=Os.26062.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26062 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsSUT4 mRNA for sucrose transporter, complete cds.
PROD=sucrose transporter
FL= gb:AY137242.1 gb:AB091673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5808011/11sucrose transporter 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58030Os.38001.1.A1_at11/112+35520748..35527178leucine-rich repeat protein, putative, expressed
LOC_Os02g58040OsAffx.24916.1.S1_at10/112+35528270..35530261F-box domain containing protein
LOC_Os02g58050OsAffx.24917.1.S1_at11/112+35534428..35537623hypothetical protein
LOC_Os02g58060NANA2+35539057..35539365hypothetical protein
LOC_Os02g58070Os.8715.1.S1_at11/112+35539685..35542373oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g58080Os.26062.1.S1_a_at11/112+35543031..35547556sucrose transporter 2, putative, expressed
LOC_Os02g58090Os.26501.1.S1_at11/112+35547995..35553041Splicing factor 3B subunit 2, putative, expressed
LOC_Os02g58100OsAffx.3100.1.S1_at11/112+35553789..35555508expressed protein
LOC_Os02g58110OsAffx.12687.1.S1_at11/112+35556810..35561862expressed protein
LOC_Os02g58120Os.52638.1.S1_at10/112+35561852..35564542expressed protein
LOC_Os02g58139Os.49282.1.S1_x_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58139Os.49282.2.S1_at11/112+35566509..35572288pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015770biological_processsucrose transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0008515molecular_functionsucrose transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26062.1.S1_a_at--357--4631Chr02:35546797..35546821 (25 bp)
GCGTTCCTTTTTCTGTGACTGCTGA
LOC_Os02g58080
Os.26062.1.S1_a_at--1035--5711Chr02:35546813..35546837 (25 bp)
GACTGCTGAGCTGACTGCTGGAACA
LOC_Os02g58080
Os.26062.1.S1_a_at--688--6631Chr02:35546967..35547081 (25 bp)
GTTGTTCCGCAGATAGTAGTGTCAC
LOC_Os02g58080
Os.26062.1.S1_a_at--1051--4771Chr02:35547194..35547218 (25 bp)
GCTGCCAAACTCTTACAGATCTGCT
LOC_Os02g58080
Os.26062.1.S1_a_at--714--3431Chr02:35547209..35547233 (25 bp)
CAGATCTGCTGGGTTCCATGGATTT
LOC_Os02g58080
Os.26062.1.S1_a_at--195--4351Chr02:35547248..35547272 (25 bp)
CCAGCCGCATGGTGTGTAACATTGA
LOC_Os02g58080
Os.26062.1.S1_a_at--1080--5971Chr02:35547271..35547295 (25 bp)
GAGAAATGCAACTCCATTTTGCCAT
LOC_Os02g58080
Os.26062.1.S1_a_at--633--4311Chr02:35547284..35547308 (25 bp)
CCATTTTGCCATTCGTTTACAGTGA
LOC_Os02g58080
Os.26062.1.S1_a_at--381--2771Chr02:35547426..35547450 (25 bp)
AAGAGCTGTATCTACTTTTTTGACA
LOC_Os02g58080
Os.26062.1.S1_a_at--781--2291Chr02:35547454..35547478 (25 bp)
AAATGTAAGCTCTGCCCGAATGACA
LOC_Os02g58080
Os.26062.1.S1_a_at--734--9811Chr02:35547521..35547545 (25 bp)
TAACACGTTTTGGTCACAGCTTGCC
LOC_Os02g58080
Target Sequence 
GCGTTCCTTTTTCTGTGACTGCTGAGCTGACTGCTGGAACAGGANGTGGACAAGGTCTGGCAACAGGAGTCCTGAACCTT
GCAATCGTTGTTCCGCAGATAGTAGTGTCACTAGGAGCAGGTCCATGGGATGCTCTCTTTGGGGGAGGGAACGTCCCTGC
TTTCGCCTTGGCTTCCGTTTTCTCACTAGGAGCTGGTGTCCTCGCGGTCCTTAAGCTACCCAAGCTGCCAAACTCTTACA
GATCTGCTGGGTTCCATGGATTTGGCTGAGCAGAACACCAGCCGCATGGTGTGTAACATTGAGAAATGCAACTCCATTTT
GCCATTCGTTTACAGTGAAATGATTCTTTTTACCTACTACTACAACAGAATAAGCTGAAAAGATAGAGATTAGGATAGAG
AGCTAGGTAACTAGTCCAGTTAGGTTGATGTGCATACAAGGCAATTGGAAGGTGTAAGAGCTGTATCTACTTTTTTGACA
GAAAAATGTAAGCTCTGCCCGAATGACATGGCGGATAGATTTTACAATGGATGTAATCATGTACTATATATAACACGTTT
TGGTCACAGCTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26062.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis