Browse Element(s) Details


Os.26079.1.S1_at

Description gb:AK070652.1
DB_XREF= gi:32980676
TID=Os.26079.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063C09, full insert sequence.
FL= gb:AK070652.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5060011/11glycosyl transferase family 8 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50560Os.50871.1.S1_at11/112+30866902..30877002DEAD/DEAH box helicase, putative, expressed
LOC_Os02g50570Os.5163.1.S1_at11/112+30876083..30880539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g50580OsAffx.3027.1.S1_at11/112+30885429..30886141hypothetical protein
LOC_Os02g50590OsAffx.24814.1.S1_at11/112+30889298..30892658hypothetical protein
LOC_Os02g50600Os.26079.1.S1_at11/112+30893712..30895431glycosyl transferase family 8 protein, putative, expressed
LOC_Os02g50610Os.31535.1.A1_at1/112+30898909..30903290hypothetical protein
LOC_Os02g50620Os.10143.1.S1_at11/112+30912914..30917073Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os02g50630Os.47376.1.A1_at11/112+30918595..30922045Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os02g50630Os.57060.1.S1_at1/112+30918595..30922045Transcription factor E2F/dimerisation partner family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26079.1.S1_at--180--4211Chr02:30894232..30894256 (25 bp)
CCGCTCGACCACACTTGGAAATCAT
LOC_Os02g50600
Os.26079.1.S1_at--193--2271Chr02:30894214..30894238 (25 bp)
AAATCATACGACCTCTACATTGCAG
LOC_Os02g50600
Os.26079.1.S1_at--48--5051Chr02:30894193..30894217 (25 bp)
GCAGAGGGTGATTCATCTTCAGCAT
LOC_Os02g50600
Os.26079.1.S1_at--957--10511Chr02:30894176..30894200 (25 bp)
TTCAGCATCAGCACCGTTCGCATTG
LOC_Os02g50600
Os.26079.1.S1_at--1087--4031Chr02:30894162..30894186 (25 bp)
CGTTCGCATTGTCATCATCGGCATT
LOC_Os02g50600
Os.26079.1.S1_at--783--9131Chr02:30894134..30894158 (25 bp)
TGCGGCGGCATTTTCTTGGTAGACA
LOC_Os02g50600
Os.26079.1.S1_at--536--8671Chr02:30894056..30894080 (25 bp)
TGTGGTGATGGAATTGCTTTGCAAT
LOC_Os02g50600
Os.26079.1.S1_at--1083--10731Chr02:30894038..30894062 (25 bp)
TTGCAATTCATTGCCACAGCCATCA
LOC_Os02g50600
Os.26079.1.S1_at--387--3951Chr02:30893954..30893978 (25 bp)
CGGCACACTGCGGTGGCGCACAAAG
LOC_Os02g50600
Os.26079.1.S1_at--324--5271Chr02:30893759..30893783 (25 bp)
GAATCCACATGTTTGTTCGCTGAAC
LOC_Os02g50600
Os.26079.1.S1_at--59--6711Chr02:30893745..30893769 (25 bp)
GTTCGCTGAACTCGCATAATATTGA
LOC_Os02g50600
Target Sequence 
CCGCTCGACCACACTTGGAAATCATACGACCTCTACATTGCAGAGGGTGATTCATCTTCAGCATCAGCACCGTTCGCATT
GTCATCATCGGCATTNCCTGCGGCGGCATTTTCTTGGTAGACAGCTAATGAGTATACACAATAATTCTTTCATTGAGGTT
NCCTTGTGGAGCTGTGTGTGGTGATGGAATTGCTTTGCAATTCATTGCCACAGCCATCACAGCTGCCACCACAAGCCAGC
TGNCGCNTTCGGCTGTACAGGACAGTGAAGGGGAGGGGCGGCACACTGCGGTGGCGCACAAAGGGAAGATGGAGAATAGA
GGAAGCAAATTCTTGTTCATTTGTGGTACAATTCAGATTGATTCGTTAGGCTTNGGTNNGNAGGTGNCTGACTTTGGGGG
GATGGAATTACTTGATTGGTGGTGTACAATTCTTGGATAGGATAAAGGTTTCATTTTTTTGTCTATTAGTTCAGAATCCA
CATGTTTGTTCGCTGAACTCGCATAATATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis