Browse Element(s) Details


Os.26082.1.S1_s_at

Description gb:AK070270.1
DB_XREF= gi:32980294
TID=Os.26082.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26082 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023045H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045H02, full insert sequence.
FL= gb:AK070270.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1581011/11HMG box family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15780OsAffx.24272.1.S1_at11/112+8914363..8914846hypothetical protein
LOC_Os02g15790OsAffx.2631.1.S1_at11/112+8917942..8923329hypothetical protein
LOC_Os02g15790Os.27021.1.S1_x_at1/112+8917942..8923329hypothetical protein
LOC_Os02g15790Os.27021.1.S1_at1/112+8917942..8923329hypothetical protein
LOC_Os02g15800OsAffx.12060.1.S1_at11/112+8927860..8928276hypothetical protein
LOC_Os02g15810OsAffx.12061.1.S1_s_at11/112+8935098..8937137HMG box family protein, expressed
LOC_Os02g15810Os.26082.1.S1_s_at11/112+8935098..8937137HMG box family protein, expressed
LOC_Os02g15820Os.49081.1.S1_at11/112+8938131..8943555expressed protein
LOC_Os02g15830NANA2+8948235..8948624hypothetical protein
LOC_Os02g15840OsAffx.12062.1.S1_at11/112+8956012..8956689hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0000785cellular_componentchromatin
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0003700molecular_functiontranscription factor activity
GO:0030527molecular_functionstructural constituent of chromatin
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26082.1.S1_s_at--330--4471Chr02:8935399..8935423 (25 bp)
GCCTCGTCCTAGTCGCCATGGATGG
LOC_Os02g15810
Os.26082.1.S1_s_at--874--7491Chr02:8935363..8935387 (25 bp)
GTGGTCCTAACGCTGACGAGGATTC
LOC_Os02g15810
Os.26082.1.S1_s_at--618--4751Chr02:8935352..8935376 (25 bp)
GCTGACGAGGATTCTCTTCTCTGAA
LOC_Os02g15810
Os.26082.1.S1_s_at--323--7931Chr02:8935344..8935368 (25 bp)
GGATTCTCTTCTCTGAATCCAATGG
LOC_Os02g15810
Os.26082.1.S1_s_at--638--3451Chr02:8935313..8935337 (25 bp)
CAGTAGCTTTGGTGATTGGTGCGAA
LOC_Os02g15810
Os.26082.1.S1_s_at--165--10851Chr02:8935298..8935322 (25 bp)
TTGGTGCGAAGTTATCTGTTGCGTT
LOC_Os02g15810
Os.26082.1.S1_s_at--308--2831Chr02:8935290..8935314 (25 bp)
AAGTTATCTGTTGCGTTTGGTCTGG
LOC_Os02g15810
Os.26082.1.S1_s_at--1033--9091Chr02:8935279..8935303 (25 bp)
TGCGTTTGGTCTGGTTTAGGCGTAA
LOC_Os02g15810
Os.26082.1.S1_s_at--1058--10071Chr02:8935263..8935287 (25 bp)
TAGGCGTAACATTTCGTATGGATTG
LOC_Os02g15810
Os.26082.1.S1_s_at--432--7691Chr02:8935238..8935262 (25 bp)
GGGTATTCTGCTTCAATTTTATAAC
LOC_Os02g15810
Os.26082.1.S1_s_at--268--3191Chr02:8935225..8935249 (25 bp)
CAATTTTATAACTCAGCAAGCTTGA
LOC_Os02g15810
Target Sequence 
GCCTCGTCCTAGTCGCCATGGATGGCGATGGTGGTGGTGGTCCTAACGCTGACGAGGATTCTCTTCTCTGAATCCAATGG
NGAAAACAGTAGCTTTGGTGATTGGTGCGAAGTTATCTGTTGCGTTTGGTCTGGTTTAGGCGTAACATTTCGTATGGATT
GGGGTATTCTGCTTCAATTTTATAACTCAGCAAGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26082.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis