Browse Element(s) Details


Os.2612.1.S1_at

Description gb:AF309378.1
DB_XREF= gi:11177832
TID=Os.2612.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2612 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) clone C12112_1A putative glutathione S-transferase OsGSTU4 mRNA, complete cds.
PROD=putative glutathione S-transferase OsGSTU4
FL= gb:AF309378.1 gb:AK103453.1 gb:AY271619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3848911/11glutathione S-transferase GSTU6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38420NANA10+20198629..20199851retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38440OsAffx.18568.1.S1_at10/1110+20202693..20204410transposon protein, putative, unclassified
LOC_Os10g38440OsAffx.14234.1.S1_at2/1110+20202693..20204410transposon protein, putative, unclassified
LOC_Os10g38450Os.46812.2.S1_x_at11/1110+20208026..20210800Leucine Rich Repeat family protein, expressed
LOC_Os10g38450Os.46812.1.S1_at11/1110+20208026..20210800Leucine Rich Repeat family protein, expressed
LOC_Os10g38460NANA10+20214943..20215845retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38470Os.5441.1.S1_at11/1110+20221525..20222677glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.46634.1.S1_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.7794.1.S1_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.2612.1.S1_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.46634.1.S1_x_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38510OsAffx.30711.1.S1_at11/1110+20235991..20236556hypothetical protein
LOC_Os10g38520OsAffx.29536.3.S1_x_at3/1110+20239435..20239857hypothetical protein
LOC_Os10g38540Os.7174.1.S1_at11/1110+20245154..20246432glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38540Os.46634.1.S1_x_at1/1110+20245154..20246432glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38540Os.46635.1.S1_x_at1/1110+20245154..20246432glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38550NANA10+20250679..20251251transposon protein, putative, unclassified
LOC_Os10g38560NANA10+20252697..20254109retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2612.1.S1_at--17--4111Chr10:20227492..20227516 (25 bp)
CGACACAGTCGGGATCGTGGACGTC
LOC_Os10g38489
Os.2612.1.S1_at--656--8531Chr10:20227509..20227533 (25 bp)
TGGACGTCGCGCTTGGTGGCCTCAT
LOC_Os10g38489
Os.2612.1.S1_at--368--3611Chr10:20227520..20227544 (25 bp)
CTTGGTGGCCTCATCTCGTGGGTGA
LOC_Os10g38489
Os.2612.1.S1_at--324--4091Chr10:20227548..20227572 (25 bp)
CGACCGAGGTGCTCGCTGGCTCCAA
LOC_Os10g38489
Os.2612.1.S1_at--1126--1451Chr10:20227587..20227611 (25 bp)
AGAAGGCCCCTCTTTTGGCCGCGTG
LOC_Os10g38489
Os.2612.1.S1_at--568--1231Chr10:20227677..20227701 (25 bp)
AGTTCGCTAAGATGAGGCTGGCAGA
LOC_Os10g38489
Os.2612.1.S1_at--902--9151Chr10:20227714..20227738 (25 bp)
TGCCGCGGCGGCTTCAAAAAACTAA
LOC_Os10g38489
Os.2612.1.S1_at--150--10871Chr10:20227750..20227774 (25 bp)
TTGGTTATGTCGTGGTAACTCCCAT
LOC_Os10g38489
Os.2612.1.S1_at--743--7171Chr10:20227758..20227782 (25 bp)
GTCGTGGTAACTCCCATTGTTTGGG
LOC_Os10g38489
Os.2612.1.S1_at--1069--6531Chr10:20227857..20227881 (25 bp)
GATTTAGTGTTTTTTCTGTATCAGT
LOC_Os10g38489
Os.2612.1.S1_at--425--3451Chr10:20227878..20227902 (25 bp)
CAGTATCTTGATTTATGTCTGAATA
LOC_Os10g38489
Target Sequence 
CGACACAGTCGGGATCGTGGACGTCGCGCTTGGTGGCCTCATCTCGTGGGTGAAAGCGACCGAGGTGCTCGCTGGCTCCA
AGATCTTCGACGAGGAGAAGGCCCCTCTTTTGGCCGCGTGGGCGCAGCGCTTCGGCGAGCTCGACGTCGCCGAGAAGGTG
TTGCCGGATGTCGACGGGGTGGTCGAGTTCGCTAAGATGAGGCTGGCAGAGGCAGCTGCGGCTGCCGCGGCGGCTTCAAA
AAACTAAGATGGATATGTTTGGTTATGTCGTGGTAACTCCCATTGTTTGGGAGAAAATAATGTGCTTGTTGGAAAAATTA
TTTGGGAGAAACTAATGTGCTTGTTGGAAAAGAATAGATTTAGTTGATTTAGTGTTTTTTCTGTATCAGTATCTTGATTT
ATGTCTGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis