Browse Element(s) Details


Os.26133.1.S1_at

Description gb:AK070986.1
DB_XREF= gi:32981009
TID=Os.26133.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26133 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078F08, full insert sequence.
FL= gb:AK070986.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g476509/11pathogen induced protein 2-4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47610Os.8713.1.S1_at11/112+29089118..29091582NmrA-like family protein, expressed
LOC_Os02g47620Os.11566.1.S1_at11/112+29093171..29095421hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g47630OsAffx.24768.1.S1_at11/112+29099537..29101181hypothetical protein
LOC_Os02g47640Os.51217.3.S1_x_at11/112+29102646..29106195tubby, putative, expressed
LOC_Os02g47640Os.51217.2.S1_x_at11/112+29102646..29106195tubby, putative, expressed
LOC_Os02g47650Os.53444.1.S1_at11/112+29107576..29111301pathogen induced protein 2-4, putative, expressed
LOC_Os02g47650Os.26133.1.S1_at9/112+29107576..29111301pathogen induced protein 2-4, putative, expressed
LOC_Os02g47660Os.7751.1.S1_at11/112+29111213..29113422Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g47660Os.50309.1.S1_at1/112+29111213..29113422Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g47670Os.11732.1.S1_a_at11/112+29129182..29135763U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0009269biological_processresponse to desiccation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26133.1.S1_at--599--5371Chr02:29109014..29109271 (25 bp)
GAAGACATCACTGGTCCGGACCAAG
LOC_Os02g47650
Os.26133.1.S1_at--773--7791Chr02:29109259..29109283 (25 bp)
GGTCCGGACCAAGGCAAGGATTGTT
LOC_Os02g47650
Os.26133.1.S1_at--956--4691Chr02:29109322..29109346 (25 bp)
GCGGCTAAAGCCTGCAGCAGTCATT
LOC_Os02g47650
Os.26133.1.S1_at--29--6151NONE
GAGGTCTAATTCAGAGTGTGTTGCA
NONE
Os.26133.1.S1_at--793--7111Chr02:29110443..29110467 (25 bp)
GTCAGTGAATATTGCTTCCACAACT
LOC_Os02g47650
Os.26133.1.S1_at--944--7171Chr02:29111015..29111039 (25 bp)
GTCTGTGCTTTAAAGGGCGGAAGAA
LOC_Os02g47650
Os.26133.1.S1_at--994--4011Chr02:29111065..29111089 (25 bp)
CGTCGGTATGGTGTTGTGCTTTCAA
LOC_Os02g47650
Os.26133.1.S1_at--550--311Chr02:29111103..29111127 (25 bp)
ATACGTAGTGTTGTGAATTGTTAGC
LOC_Os02g47650
Os.26133.1.S1_at--1139--6771Chr02:29111122..29111146 (25 bp)
GTTAGCATATTTGTACTGGATTGGT
LOC_Os02g47650
Os.26133.1.S1_at--450--6311Chr02:29111242..29111266 (25 bp)
GATGACATTAGTACAGTTTCTATGA
LOC_Os02g47650
Os.26133.1.S1_at--1031--6771NONE
GTTACGTAACGTATACCTTGACAGC
NONE
Target Sequence 
GAAGACATCACTGGTCCGGACCAAGGCAAGGATTGTTGAAGGGGATGCTGGAAAGGTTATTTGCCGAGAGGCAGAGCGGC
TAAAGCCTGCAGCAGTCATTCTGGNCACTCGTGGAAGAGGTCTAATTCAGAGTGTGTTGCAGGGAAGTGTCAGTGAATAT
TGCTTCCACAACTGTAAAGCAGCCCCNGTTATCATTGTTCCAGGCANAAGAAGCTGGTGAACANGTCTGTGCTTTAAAGG
GCGGAAGAATGAAGATAGGTTGCAGATGATGGTGCGTCGGTATGGTGTTGTGCTTTCAATTATTGTAATTTTATACGTAG
TGTTGTGAATTGTTAGCATATTTGTACTGGATTGGTATTGTTTGGTAGTGTAATGAAGGATGATGGATTGTTTAGAAGTT
GGTGGAGTAGCNAAGGCAAATATAAACACACAAATGTACTTGTATTGCCANTTGATGACATTAGTACAGTTTCTATGAAT
AAAGAATCTTCAGCCACNAATATTGATGTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGACATGCC
GTTACGTAACGTATACCTTGACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis