Browse Element(s) Details


Os.2618.1.S1_at

Description gb:AF203879.1
DB_XREF= gi:11761653
TID=Os.2618.1
CNT=52
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2618 (NCBI UniGene Cluster)
DEF=Oryza sativa peroxiredoxin mRNA, complete cds.
PROD=peroxiredoxin
FL= gb:AK058509.1 gb:AF203879.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4842010/11AhpC/TSA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48370Os.22785.1.S1_a_at11/111+28043036..28048065Tub family protein, expressed
LOC_Os01g48380Os.17708.1.S1_at11/111+28052430..28059329pentatricopeptide, putative, expressed
LOC_Os01g48390Os.26447.1.A1_at11/111+28060576..28066692leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g48400OsAffx.11517.1.S1_at11/111+28067527..28067748hypothetical protein
LOC_Os01g48410Os.6355.1.S1_at11/111+28069074..28071989pollen-specific kinase partner protein, putative, expressed
LOC_Os01g48420Os.39012.1.S1_s_at11/111+28072620..28074766AhpC/TSA family protein, expressed
LOC_Os01g48420Os.2618.1.S1_at10/111+28072620..28074766AhpC/TSA family protein, expressed
LOC_Os01g48430OsAffx.21508.1.S1_x_at11/111+28081498..28082613hypothetical protein
LOC_Os01g48430OsAffx.21508.1.S1_at11/111+28081498..28082613hypothetical protein
LOC_Os01g48440Os.19374.2.S1_x_at11/111+28084613..28088542Glycosyltransferase family 43 protein, expressed
LOC_Os01g48440Os.19374.1.S1_at10/111+28084613..28088542Glycosyltransferase family 43 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016209molecular_functionantioxidant activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2618.1.S1_at--374--5831NONE
GACCTGCAGCAATCAGCATGTGCCA
NONE
Os.2618.1.S1_at--487--391Chr01:28073453..28073477 (25 bp)
ATCAGCATGTGCCAGGATTCATAAA
LOC_Os01g48420
Os.2618.1.S1_at--138--3871Chr01:28073423..28073447 (25 bp)
CTGAGCAGCTCAAAGCCAAGGGTGT
LOC_Os01g48420
Os.2618.1.S1_at--1038--1051Chr01:28073405..28073429 (25 bp)
AGGGTGTAGACGACATCTTGCTTGT
LOC_Os01g48420
Os.2618.1.S1_at--584--2091Chr01:28073109..28073417 (25 bp)
ACATCTTGCTTGTCAGTGTTAACGA
LOC_Os01g48420
Os.2618.1.S1_at--125--8791Chr01:28073093..28073116 (24 bp)
TGTTAACGACCCCTTTGTCATGAAG
LOC_Os01g48420
Os.2618.1.S1_at--878--891Chr01:28073070..28073094 (25 bp)
AGGCGTGGGCAAAGTCATACCCTGA
LOC_Os01g48420
Os.2618.1.S1_at--697--771Chr01:28073037..28073061 (25 bp)
ATGTGAAATTCCTTGCCGATGGTTT
LOC_Os01g48420
Os.2618.1.S1_at--376--8651Chr01:28073013..28073037 (25 bp)
TGGGAACATACACCAAGGCACTTGG
LOC_Os01g48420
Os.2618.1.S1_at--62--7151Chr01:28072989..28073013 (25 bp)
GTCTTGAGCTTGACCTTTCGGAGAA
LOC_Os01g48420
Os.2618.1.S1_at--574--3051Chr01:28072874..28072898 (25 bp)
AATCTCTGGTGCTGAGGAGATCCTC
LOC_Os01g48420
Target Sequence 
GACCTGCAGCAATCAGCATGTGCCAGGATTCATAAATCAGGCTGAGCAGCTCAAAGCCAAGGGTGTAGACGACATCTTGC
TTGTCAGTGTTAACGACCCCTTTGTCATGAAGGCGTGGGCAAAGTCATACCCTGAGAATAAGCATGTGAAATTCCTTGCC
GATGGTTTGGGAACATACACCAAGGCACTTGGTCTTGAGCTTGACCTTTCGGAGAAAGGGCTTGGTATTCGTTCGAGACG
GTTTGCTCTCCTTGCTGACAACCTCAAGGTTACTGTTGCAAACATTGAGGAAGGTGGCCAATTCACAATCTCTGGTGCTG
AGGAGATCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis