Browse Element(s) Details


Os.26352.1.S1_at

Description gb:AB091674.1
DB_XREF= gi:29467455
GEN=OsSUT5
TID=Os.26352.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26352 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsSUT5 mRNA for sucrose transporter, complete cds.
PROD=sucrose transporter
FL= gb:AB091674.1 gb:AK073105.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3670011/11sucrose transporter BoSUT1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36640OsAffx.22699.1.S1_x_at1/112+22115688..22121634retrotransposon protein, putative, unclassified
LOC_Os02g36640OsAffx.18375.1.S1_at1/112+22115688..22121634retrotransposon protein, putative, unclassified
LOC_Os02g36650Os.27066.1.A1_x_at1/112+22122353..22125524hypothetical protein
LOC_Os02g36660NANA2+22127207..22127503retrotransposon, putative, centromere-specific
LOC_Os02g36670OsAffx.2883.1.S1_at11/112+22129647..22131075hypothetical protein
LOC_Os02g36680Os.8220.1.S1_at10/112+22134763..22136125expressed protein
LOC_Os02g36690OsAffx.12376.1.S1_x_at9/112+22138388..22139129hypothetical protein
LOC_Os02g36690OsAffx.12376.1.S1_at6/112+22138388..22139129hypothetical protein
LOC_Os02g36690Os.52986.1.S2_at1/112+22138388..22139129hypothetical protein
LOC_Os02g36700Os.26352.1.S1_at11/112+22140560..22144278sucrose transporter BoSUT1, putative, expressed
LOC_Os02g36710Os.6793.1.S1_at11/112+22145697..22150173Nucleosome assembly protein containing protein, expressed
LOC_Os02g36720OsAffx.2884.1.S1_at10/112+22151324..22152489hypothetical protein
LOC_Os02g36730OsAffx.2885.1.S1_at11/112+22155458..22155790hypothetical protein
LOC_Os02g36740Os.18677.1.S1_at9/112+22157430..22161437zinc finger family protein, putative, expressed
LOC_Os02g36749NANA2+22163468..22164283hypothetical protein
LOC_Os02g36760OsAffx.12377.1.S1_at7/112+22166797..22167042hypothetical protein
LOC_Os02g36770OsAffx.24601.1.S1_at11/112+22168446..22172832Galactosyltransferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009915biological_processphloem loading
GO:0048316biological_processseed development
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0008515molecular_functionsucrose transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26352.1.S1_at--659--2891Chr02:22141182..22141205 (24 bp)
AAGGTCTTGCCATTGGTGTCCTCAA
LOC_Os02g36700
Os.26352.1.S1_at--538--51Chr02:22141047..22141174 (25 bp)
ATTGTTGTCCCACAGCTGGTGATCG
LOC_Os02g36700
Os.26352.1.S1_at--595--10631Chr02:22140951..22140975 (25 bp)
TTCGCCTTCATCTGTGGAGTCCTTG
LOC_Os02g36700
Os.26352.1.S1_at--54--10711Chr02:22140929..22140953 (25 bp)
TTGCGCTCATCTGGCTACCAAAGAC
LOC_Os02g36700
Os.26352.1.S1_at--1144--8351Chr02:22140873..22140897 (25 bp)
GGCGGTCACTAGTGCGAAACTCCAT
LOC_Os02g36700
Os.26352.1.S1_at--614--531Chr02:22140825..22140849 (25 bp)
ATCGCCGATCGATGTGCCATGAATT
LOC_Os02g36700
Os.26352.1.S1_at--113--3751Chr02:22140764..22140788 (25 bp)
CTCAATGTTGATTCGTTCGCTGTGT
LOC_Os02g36700
Os.26352.1.S1_at--379--9911Chr02:22140717..22140741 (25 bp)
TACTCGTTCATGTCCATGTGAGAGT
LOC_Os02g36700
Os.26352.1.S1_at--457--2111Chr02:22140673..22140697 (25 bp)
ACAGGAATTTTCCTGGCTGCCTTGT
LOC_Os02g36700
Os.26352.1.S1_at--819--10171Chr02:22140649..22140673 (25 bp)
TTTATTGGCAGATCTCAGGAAACCC
LOC_Os02g36700
Os.26352.1.S1_at--867--1091Chr02:22140586..22140610 (25 bp)
AGTGGTAGCAGCTTCTGAACAACGA
LOC_Os02g36700
Target Sequence 
AAGGTCTTGCCATTGGTGTCCTCAACATTGCCATTGTTGTCCCACAGCTGGTGATCGCGCTCACCGCCGGCCCGATCGAC
GGCGCCTTCAACAAGGGGAACACGCCGGCGTTCGGCATCGGCGGCGCCTTCGCCTTCATCTGTGGAGTCCTTGCGCTCAT
CTGGCTACCAAAGACAAGGGGTGTGTCCAACGCCGCCGTCGTCGCCGGCGGTCACTAGTGCGAAACTCCATCAAAGGCAC
CACCCGGCCGGCCTATCGCCGATCGATGTGCCATGAATTGGGAGTGCATGAGACTCTGAAAATTTTCGCTACAAACTCAA
TGTTGATTCGTTCGCTGTGTTGTCNTTAGTTTTTTTTTTCCCTACTCGTTCATGTCCATGTGAGAGTGTTAAGCCGTAGA
GGACAAACAGGAATTTTCCTGGCTGCCTTGTTTATTGGCAGATCTCAGGAAACCCAAATATTTTAAGATGAAGAATTGTT
CTCNCTGCTTTAGAGTGGTAGCAGCTTCTGAACAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis