Browse Element(s) Details


Os.26357.1.S1_at

Description gb:AK101210.1
DB_XREF= gi:32986419
TID=Os.26357.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26357 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29967 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031A17, full insert sequence.
FL= gb:AK059886.1 gb:AK101210.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3562011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35580OsAffx.19979.1.S1_at11/1112+21603754..21605381riboflavin synthase, alpha subunit family protein, expressed
LOC_Os12g35590Os.11380.1.S1_s_at11/1112+21606972..21608016expressed protein
LOC_Os12g35590Os.11380.1.S1_x_at11/1112+21606972..21608016expressed protein
LOC_Os12g35600NANA12+21610850..21611176retrotransposon protein, putative, unclassified
LOC_Os12g35610OsAffx.32039.1.S1_x_at11/1112+21614713..21620116respiratory burst oxidase homolog, putative, expressed
LOC_Os12g35620Os.26357.1.S1_at11/1112+21621504..21625750expressed protein
LOC_Os12g35630Os.26798.1.S1_at11/1112+21627212..21633147Elongation factor TS family protein, expressed
LOC_Os12g35630Os.26798.2.S1_a_at11/1112+21627212..21633147Elongation factor TS family protein, expressed
LOC_Os12g35640OsAffx.7801.1.S1_at11/1112+21633321..21635926adenosine 5'-phosphosulfate reductase 6, putative, expressed
LOC_Os12g35650Os.47463.1.S1_x_at2/1112+21640362..21645078transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35650Os.14491.2.S1_x_at2/1112+21640362..21645078transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35660NANA12+21646619..21649924transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26357.1.S1_at--1088--7731Chr12:21624718..21624742 (25 bp)
GGTGTCTCAGATACCCTAGGGAACC
LOC_Os12g35620
Os.26357.1.S1_at--1105--5311Chr12:21625329..21625353 (25 bp)
GAAGTAGAACTTGGGCCGCTTCTTT
LOC_Os12g35620
Os.26357.1.S1_at--94--9551Chr12:21625349..21625373 (25 bp)
TCTTTTTCGTGGCTCAGCTGTAGTA
LOC_Os12g35620
Os.26357.1.S1_at--128--2491Chr12:21625382..21625406 (25 bp)
AACAGAGATAACTTTGGTTCCTGAA
LOC_Os12g35620
Os.26357.1.S1_at--1141--10851Chr12:21625395..21625419 (25 bp)
TTGGTTCCTGAAACGAGTCCACGCT
LOC_Os12g35620
Os.26357.1.S1_at--59--1151Chr12:21625410..21625434 (25 bp)
AGTCCACGCTCTCTGATGGCTTCGT
LOC_Os12g35620
Os.26357.1.S1_at--1074--8471Chr12:21625426..21625450 (25 bp)
TGGCTTCGTCGTGTAGTGTTGTTAA
LOC_Os12g35620
Os.26357.1.S1_at--73--6651Chr12:21625443..21625467 (25 bp)
GTTGTTAATCGCTGTCATGACTTGT
LOC_Os12g35620
Os.26357.1.S1_at--106--5691Chr12:21625461..21625485 (25 bp)
GACTTGTGAAATCCCAGTTCTCTGG
LOC_Os12g35620
Os.26357.1.S1_at--111--3451Chr12:21625475..21625499 (25 bp)
CAGTTCTCTGGAATGGCCGTAGTAA
LOC_Os12g35620
Os.26357.1.S1_at--966--871Chr12:21625487..21625511 (25 bp)
ATGGCCGTAGTAACAATTTTATTGC
LOC_Os12g35620
Target Sequence 
GGTGTCTCAGATACCCTAGGGAACCTGAAATTGGATGATACTCCAANAAACCATGATGAAAGCAGTGATGCCAATGATGA
AAAGAATGAAACCANTGCTGAAGATNGCACGGTCGATAAAACTGTTNAGGCTGAGANTGCAAGTGATGAATGAAGTAGCG
GAGGAACCAGAAGTAGAACTTGGGCCGCTTCTTTTTCGTGGCTCAGCTGTAGTAATTTTTAGAACAGAGATAACTTTGGT
TCCTGAAACGAGTCCACGCTCTCTGATGGCTTCGTCGTGTAGTGTTGTTAATCGCTGTCATGACTTGTGAAATCCCAGTT
CTCTGGAATGGCCGTAGTAACAATTTTATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis