Browse Element(s) Details


Os.26471.2.S1_x_at

Description gb:NM_197605.1
DB_XREF= gi:37536569
TID=Os.26471.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26471 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative WD-40 repeat protein (OSJNBa0063E23.1), mRNA.
PROD=putative WD-40 repeat protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g397608/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39730OsAffx.20157.1.S1_at11/1110+20899089..20900087hypothetical protein
LOC_Os10g39740Os.4607.1.S1_at11/1110+20901909..20903398Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os10g39744OsAffx.19796.1.S1_x_at3/1110+20911783..20912449hypothetical protein
LOC_Os10g39750Os.46563.1.S1_a_at11/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39750Os.46563.1.S1_at11/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39750Os.46563.2.S1_x_at6/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39760Os.26471.1.S1_at11/1110+20923900..20927006transducin family protein, putative, expressed
LOC_Os10g39760Os.26471.2.S1_x_at8/1110+20923900..20927006transducin family protein, putative, expressed
LOC_Os10g39764NANA10+20939223..20939568NA
LOC_Os10g39770Os.46881.1.S2_at11/1110+20942029..20947104Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39770Os.46881.1.S1_at11/1110+20942029..20947104Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26471.2.S1_x_at--155--2191Chr10:20926466..20926490 (25 bp)
ACAAAACTCTGGCACTTTTCTCTAC
LOC_Os10g39760
Os.26471.2.S1_x_at--94--6431Chr10:20926501..20926525 (25 bp)
GATCTTTCATGTTCTGGCATCACGA
LOC_Os10g39760
Os.26471.2.S1_x_at--775--8271Chr10:20926516..20926540 (25 bp)
GGCATCACGACGCAGACAGCAAGCA
LOC_Os10g39760
Os.26471.2.S1_x_at--265--6571Chr10:20926553..20926577 (25 bp)
GATTCATCTGAGGATCTTGAGGACA
LOC_Os10g39760
Os.26471.2.S1_x_at--970--10491Chr10:20926590..20926614 (25 bp)
TTAATCTTGTACTCCGAGCTGCGGA
LOC_Os10g39760
Os.26471.2.S1_x_at--825--5251Chr10:20926643..20926667 (25 bp)
GAATCCTCCGAGGACTCTGGAGATT
LOC_Os10g39760
Os.26471.2.S1_x_at--432--10331Chr10:20926953..20926976 (24 bp)
TTTAGTGAGCCTACTGCTGCAAAGC
LOC_Os10g39760
Os.26471.2.S1_x_at--356--5131Chr10:20926979..20927003 (25 bp)
GCACAAGCTAGGCTGAAACCTTCGA
LOC_Os10g39760
Os.26471.2.S1_x_at--437--8971Chr10:20927782..20927801 (20 bp)
TGAAAAGGAGTACTCATCGTCGGCA
NONE
Os.26471.2.S1_x_at--408--4531Chr10:20927869..20927893 (25 bp)
GCCGCCCGCGTCAAGATCGTCGTGG
NONE
Os.26471.2.S1_x_at--741--10851Chr10:20927948..20927972 (25 bp)
TTGGGTCGCCGGAGCTCCTGCAGCA
NONE
Target Sequence 
ACAAAACTCTGGCACTTTTCTCTACCAGAGGAATTGATCTTTCATGTTCTGGCATCACGACGCAGACAGCAAGCAGCTGG
AGATGATGATTCATCTGAGGATCTTGAGGACAGCACAGGATTGCTTAATCTTGTACTCCGAGCTGCGGAGAGAGACGTGC
TATCTGATGAGGATGAAGAATCCTCCGAGGACTCTGGAGATTTTAGTGAGCCTACTGCTGCAAAGCCAGCACAAGCTAGG
CTGAAACCTTCGATACTGAAAAGGAGTACTCATCGTCGGCAACCGCTTCGTCACGGCGGCGGCGGCGGCGTGACCGTCGT
CGTGTCCCGCGGCGGCGGCGGCGGCGGCGCCGCCCGCGTCAAGATCGTCGTGGGCGAGGACGAGCTGGACCGCATCGCCG
CCGGCGTCACGCGGAGGCAATGCGCGGTTGGGTCGCCGGAGCTCCTGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26471.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis