Browse Element(s) Details


Os.26495.1.S1_at

Description gb:AK122040.1
DB_XREF= gi:37991686
TID=Os.26495.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033113E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033113E02, full insert sequence.
FL= gb:AK122040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0884011/11dnaK protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08810Os.11111.1.S1_at11/115+4832231..4843629Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os05g08810Os.11111.1.S2_at11/115+4832231..4843629Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os05g08820NANA5+4846102..4847230expressed protein
LOC_Os05g08830OsAffx.14600.1.S1_at11/115+4853930..4854130expressed protein
LOC_Os05g08840Os.26495.1.S1_at11/115+4855642..4861593dnaK protein, expressed
LOC_Os05g08850Os.54525.1.S1_x_at11/115+4863414..4865163Cytochrome P450 family protein, expressed
LOC_Os05g08860Os.51345.1.S1_at11/115+4873130..4873834expressed protein
LOC_Os05g08860Os.6152.1.S1_at1/115+4873130..4873834expressed protein
LOC_Os05g08870OsAffx.19542.3.S1_x_at5/115+4877200..4881100retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g08880OsAffx.576.1.A1_at4/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.5954.1.S1_x_at4/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.5954.3.S1_x_at2/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880Os.31535.1.A1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.19540.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.8676.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.16187.1.S1_at1/115+4882272..4887651Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0005634cellular_componentnucleus
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26495.1.S1_at--1027--8911Chr05:4861065..4861089 (25 bp)
TGAGCCTCAAACTCCAGAGCAGCAG
LOC_Os05g08840
Os.26495.1.S1_at--643--1031Chr05:4861137..4861161 (25 bp)
AGGTGCCCAGGATCAGGAGCCTACT
LOC_Os05g08840
Os.26495.1.S1_at--493--5871Chr05:4861153..4861177 (25 bp)
GAGCCTACTGCCGAGCAAATGGACA
LOC_Os05g08840
Os.26495.1.S1_at--739--5431Chr05:4861201..4861225 (25 bp)
GAACCATCGGCATAAGTTTGTTGTC
LOC_Os05g08840
Os.26495.1.S1_at--595--5471Chr05:4861236..4861260 (25 bp)
GAACTCCTGTGATCGAATGCTTCCT
LOC_Os05g08840
Os.26495.1.S1_at--1068--631Chr05:4861252..4861276 (25 bp)
ATGCTTCCTCATGTGGTTATGGTCA
LOC_Os05g08840
Os.26495.1.S1_at--1018--7031Chr05:4861387..4861411 (25 bp)
GTAAAATGCTGGTGGCTTGTCCCTT
LOC_Os05g08840
Os.26495.1.S1_at--916--8271Chr05:4861400..4861424 (25 bp)
GGCTTGTCCCTTGAATCACTTTTTT
LOC_Os05g08840
Os.26495.1.S1_at--462--3471Chr05:4861487..4861511 (25 bp)
CAGGCCTTGGTTCAACACGGGTCTA
LOC_Os05g08840
Os.26495.1.S1_at--760--3871Chr05:4861514..4861538 (25 bp)
CTGTAGCTTTTGTCCAATGGTCCAT
LOC_Os05g08840
Os.26495.1.S1_at--192--8611Chr05:4861562..4861586 (25 bp)
TGGTCCATGGGAAGAAACGCTCTCA
LOC_Os05g08840
Target Sequence 
TGAGCCTCAAACTCCAGAGCAGCAGCAGCAATCCAACGGTGCCGGTGAAGCTGAAGAGCCGACAAGCGAGGGAGGTGCCC
AGGATCAGGAGCCTACTGCCGAGCAAATGGACACAGACAAACCTGACGGTTGGGCCGAACCATCGGCATAAGTTTGTTGT
CGACAAACTAAGAACTCCTGTGATCGAATGCTTCCTCATGTGGTTATGGTCACTTGGTTTTAGGCCCGTGAATNANGCTA
GGAGAACCGGATGTTTTTTTNNGGGGTGCTGTACTTGGTGGTCACTTNCACTTGGTTGGGATTGTGACATGGACATGTTG
GTAAGGGTAAAATGCTGGTGGCTTGTCCCTTGAATCACTTTTTTTTNCTTCTCTTATTTAGGATGGTTGAATTGGGGATG
AGAGGGCATGCCACCACCCATTTATTCAGGCCTTGGTTCAACACGGGTCTAAACTGTAGCTTTTGTCCAATGGTCCATAA
CATCTAAGGAAAAACAAATTTTGGTCCATGGGAAGAAACGCTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis