Browse Element(s) Details


Os.26516.1.S1_a_at

Description gb:AK105212.1
DB_XREF= gi:32990421
TID=Os.26516.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26516 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-B09, full insert sequence.
FL= gb:AK105212.1 gb:AK106568.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2956011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29514Os.12052.1.S1_at11/1110+15001215..15006732expressed protein
LOC_Os10g29514Os.46514.2.S1_x_at5/1110+15001215..15006732expressed protein
LOC_Os10g29514OsAffx.21636.1.S1_x_at2/1110+15001215..15006732expressed protein
LOC_Os10g29530Os.26783.1.S1_at11/1110+15008816..15011868expressed protein
LOC_Os10g29530Os.26783.2.S1_x_at10/1110+15008816..15011868expressed protein
LOC_Os10g29530Os.57299.1.S1_at9/1110+15008816..15011868expressed protein
LOC_Os10g29540Os.46677.1.S1_at11/1110+15012493..15021359EDR1, putative, expressed
LOC_Os10g29560Os.26516.1.S2_s_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29560Os.26516.1.S1_a_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29560Os.5321.1.S1_at11/1110+15031169..15039671transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g29570OsAffx.20316.1.S1_at10/1110+15040381..15041796expressed protein
LOC_Os10g29580NANA10+15045228..15045807expressed protein
LOC_Os10g29590NANA10+15047024..15049211hypothetical protein
LOC_Os10g29610OsAffx.18449.1.S1_at11/1110+15062649..15063410hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26516.1.S1_a_at--289--7871Chr10:15031581..15031605 (25 bp)
GGTTTCTCTTCGTGCGGGCTCTTTA
LOC_Os10g29560
Os.26516.1.S1_a_at--883--8291Chr10:15031597..15031621 (25 bp)
GGCTCTTTACCTCCGGTGGTGGCTT
LOC_Os10g29560
Os.26516.1.S1_a_at--745--9531Chr10:15031621..15031645 (25 bp)
TCTTTGGCGGCTGCGTTTTAGGAGA
LOC_Os10g29560
Os.26516.1.S1_a_at--802--5631Chr10:15031670..15031694 (25 bp)
GACACGAAAGTGCTGCTTGCTTGTA
LOC_Os10g29560
Os.26516.1.S1_a_at--951--4911Chr10:15031684..15031708 (25 bp)
GCTTGCTTGTACACTTGTTCATGTG
LOC_Os10g29560
Os.26516.1.S1_a_at--429--6751Chr10:15031700..15031724 (25 bp)
GTTCATGTGTCTATCTGTTTTCTCG
LOC_Os10g29560
Os.26516.1.S1_a_at--644--9451Chr10:15031713..15031737 (25 bp)
TCTGTTTTCTCGATTTGTTCCGGTT
LOC_Os10g29560
Os.26516.1.S1_a_at--313--8811Chr10:15031728..15031752 (25 bp)
TGTTCCGGTTTAAAGCATCAGTTTT
LOC_Os10g29560
Os.26516.1.S1_a_at--576--9631Chr10:15031745..15031769 (25 bp)
TCAGTTTTCCGCTCAATTTAAGGGC
LOC_Os10g29560
Os.26516.1.S1_a_at--884--6791Chr10:15031786..15031810 (25 bp)
GTTATTTACTGCTGTTCTCTATCGA
LOC_Os10g29560
Os.26516.1.S1_a_at--235--6731Chr10:15031799..15031823 (25 bp)
GTTCTCTATCGAATAATCTGCTCTA
LOC_Os10g29560
Target Sequence 
GGTTTCTCTTCGTGCGGGCTCTTTACCTCCGGTGGTGGCTTCTTTGGCGGCTGCGTTTTAGGAGAGCGGCCGCCCGGCAG
GGCGGCGGAGACACGAAAGTGCTGCTTGCTTGTACACTTGTTCATGTGTCTATCTGTTTTCTCGATTTGTTCCGGTTTAA
AGCATCAGTTTTCCGCTCAATTTAAGGGCGAAGGCAAAATTTTTTGTTATTTACTGCTGTTCTCTATCGAATAATCTGCT
CTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26516.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis