Browse Element(s) Details


Os.26532.1.S1_x_at

Description gb:AK058829.1
DB_XREF= gi:32968847
TID=Os.26532.1
CNT=38
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.26532 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) 40S ribosomal protein S23 (P0460C04.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-A03, full insert sequence.
FL= gb:AK058829.1 gb:AK069399.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6182011/11ribosomal protein S23 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61780Os.14624.2.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_a_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61800OsAffx.21767.1.S1_at6/111+36079339..36081044ZmEBE-1 protein, putative, expressed
LOC_Os01g61810Os.22637.1.S1_a_at11/111+36083183..36085512CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g61820Os.26532.1.S1_a_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.1.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.2.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.57454.1.S1_x_at7/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.28576.2.S1_x_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.22334.1.S1_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61830Os.32086.3.S1_s_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.1.S1_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.2.S1_x_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.3.S1_x_at10/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61840OsAffx.23886.1.S1_x_at5/111+36102919..36103158hypothetical protein
LOC_Os01g61850NANA1+36108739..36109430expressed protein
LOC_Os01g61860OsAffx.23887.2.S1_x_at11/111+36111315..36120301RabGAP/TBC domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26532.1.S1_x_at--1087--9112Chr01:36090817..36090841 (25 bp)
TGCTGGATTTGGTCGTAAGGGCCAT
LOC_Os01g61820
Os.26532.1.S1_x_at--10--7852Chr01:36090684..36090708 (25 bp)
GGTACATCTTGGTTGGCAAGCATGG
LOC_Os01g61820
Os.26532.1.S1_x_at--109--7913Chr06:10364688..10364807 (25 bp)
GGTTGGCAAGCATGGAATAGACAGA
NONE
Os.26532.1.S1_x_at--455--10431Chr01:36087060..36087084 (25 bp)
TTAGATGCTCAAGAATGAAGGCTTT
LOC_Os01g61820
Os.26532.1.S1_x_at--502--6192Chr01:36090625..36090649 (25 bp)
GATGGTTCCTTGCTATGTTTAAAGT
LOC_Os01g61820
Os.26532.1.S1_x_at--671--3631Chr01:36087014..36087038 (25 bp)
CTTGCTATGTTTAAAGTGCGCTCTT
LOC_Os01g61820
Os.26532.1.S1_x_at--718--7291Chr01:36086999..36087023 (25 bp)
GTGCGCTCTTTATATTGTTAACTTA
LOC_Os01g61820
Os.26532.1.S1_x_at--1111--8653Chr01:11965645..11966027 (25 bp)
TGTTAACTTAAGATTGTGTTGGTAA
NONE
Os.26532.1.S1_x_at--620--7412Chr01:36090572..36090596 (25 bp)
GTGTTGGTAAAAACCATGCCTTGTC
LOC_Os01g61820
Os.26532.1.S1_x_at--154--591Chr01:36086954..36086978 (25 bp)
ATGCCTTGTCAGATTTTTGCTTCTG
LOC_Os01g61820
Os.26532.1.S1_x_at--19--7631Chr01:36086924..36086948 (25 bp)
GGGAAAGTACTGTGCTGAGCTATTT
LOC_Os01g61820
Target Sequence 
TGCTGGATTTGGTCGTAAGGGCCATGCTGTGGGAGATATTCCTGGTGTCCGGTTCAAGGTCGTCAAGGTCTCTGGTGTGT
CTCTNCTTGCTCTCTTCAAGGAGAAGAAGGAGAAGCCGAGGTCTTAGATTACTGGTACATCTTGGTTGGCAAGCATGGAA
TAGACAGAATGAAAGGCTTTAGATGCTCAAGAATGAAGGCTTTAGATGNTCAAGANGATGGTTCCTTGCTATGTTTAAAG
TGCGCTCTTTATATTGTTAACTTAAGATTGTGTTGGTAAAAACCATGCCTTGTCAGATTTTTGCTTCTGTTAAGGGGAAA
GTACTGTGCTGAGCTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26532.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis