Browse Element(s) Details


Os.26549.1.S1_at

Description gb:AK105616.1
DB_XREF= gi:32990825
TID=Os.26549.1
CNT=31
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.26549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B11, full insert sequence.
FL= gb:AK105616.1 gb:AK120704.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5498011/11Rieske domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54960OsAffx.3076.1.S1_s_at11/112+33657686..33662999carboxyl-terminal proteinase, putative, expressed
LOC_Os02g54960OsAffx.3076.1.S1_at9/112+33657686..33662999carboxyl-terminal proteinase, putative, expressed
LOC_Os02g54970OsAffx.12648.1.S1_at11/112+33667028..33669164hypothetical protein
LOC_Os02g54980Os.26549.1.S1_at11/112+33682481..33684617Rieske domain containing protein, expressed
LOC_Os02g54990Os.37836.1.S1_at11/112+33684922..33688265TMS membrane family protein, putative, expressed
LOC_Os02g55000Os.15421.1.S1_at11/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55000Os.15421.1.S1_x_at11/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55000Os.15421.2.S1_at9/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55010Os.50477.1.S1_at11/112+33694546..33700463expressed protein
LOC_Os02g55010Os.4222.1.S1_at1/112+33694546..33700463expressed protein
LOC_Os02g55020Os.53988.1.S1_at10/112+33700647..33702979expressed protein
LOC_Os02g55030Os.7748.1.S1_at11/112+33704084..33713617hydrolase, NUDIX family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0009908biological_processflower development
GO:0010154biological_processfruit development
GO:0015995biological_processchlorophyll biosynthesis
GO:0015996biological_processchlorophyll catabolism
GO:0009507cellular_componentchloroplast
GO:0009055molecular_functionelectron carrier activity
GO:0016630molecular_functionprotochlorophyllide reductase activity
GO:0046407molecular_functionchlorophyll a oxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26549.1.S1_at--625--591Chr02:33684058..33684082 (25 bp)
ATGCCGTACTACTTCGGGCACAGCA
LOC_Os02g54980
Os.26549.1.S1_at--802--3251Chr02:33684204..33684228 (25 bp)
CAACAGGTACTTCCGCCATGTCGTG
LOC_Os02g54980
Os.26549.1.S1_at--509--2771Chr02:33684256..33684280 (25 bp)
AAGAGGTACGCCTCGCTCAAGAACG
LOC_Os02g54980
Os.26549.1.S1_at--487--4071Chr02:33684329..33684353 (25 bp)
CGACCAGGCAATTGAAGGCCGTCCT
LOC_Os02g54980
Os.26549.1.S1_at--1024--3991Chr02:33684383..33684407 (25 bp)
CGTCGTACGCGTGTAACTGGGTGCT
LOC_Os02g54980
Os.26549.1.S1_at--77--8751Chr02:33684394..33684418 (25 bp)
TGTAACTGGGTGCTGTCTCTCATCA
LOC_Os02g54980
Os.26549.1.S1_at--256--3871Chr02:33684406..33684430 (25 bp)
CTGTCTCTCATCACGACCAATTTTA
LOC_Os02g54980
Os.26549.1.S1_at--227--2131Chr02:33684440..33684464 (25 bp)
ACAGGAGACTGTAACCGTGGCAATG
LOC_Os02g54980
Os.26549.1.S1_at--228--2631Chr02:33684452..33684476 (25 bp)
AACCGTGGCAATGGCTGTCATGCTT
LOC_Os02g54980
Os.26549.1.S1_at--228--8351Chr02:33684464..33684488 (25 bp)
GGCTGTCATGCTTTGGCACATACTA
LOC_Os02g54980
Os.26549.1.S1_at--578--4871Chr02:33684510..33684534 (25 bp)
GCTATTTCATTATTTTTGCCCTTGT
LOC_Os02g54980
Target Sequence 
ATGCCGTACTACTTCGGGCACAGCACGCTGTCGCCGCCGCCGGTGCCGGCCGTNGTCGAGCAGGCGCCGGCGGGGNCGGT
CGCCGGGATGTCCGCGTCGTTCCCGGCCAAGGGCGGCGTCGGCGCCACGCACGCGCCCAACCCGACCAACAGGTACTTCC
GCCATGTCGTGCACTGCAAGGGGTGCAGGGACAGCGTCAAGAGGTACGCCTCGCTCAAGAACGCCTTCGCCGCNCTCGCC
GCGGCGGCGGTGGCGGCGGCCATCCTGGCGGCGACCAGGCAATTGAAGGCCGTCCTGCTGGCGTCCGCGGCCGCGCTCGC
CGCGGCGTCGTACGCGTGTAACTGGGTGCTGTCTCTCATCACGACCAATTTTATTAGGACACACAGGAGACTGTAACCGT
GGCAATGGCTGTCATGCTTTGGCACATACTAATAGCAAGGTAGAATGGTACAGCTATTTCATTATTTTTGCCCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis