Browse Element(s) Details


Os.26562.1.S1_at

Description gb:AK122012.1
DB_XREF= gi:37991635
TID=Os.26562.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26562 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033111I18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033111I18, full insert sequence.
FL= gb:AK122012.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0107011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01010Os.24643.1.S1_at11/111+1..7364RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os01g01020NANA1+8174..9019cytochrome P450 family protein, putative
LOC_Os01g01030Os.33183.1.S1_at11/111+9523..12619Monocopper oxidase precursor, putative, expressed
LOC_Os01g01030Os.33183.2.S1_at10/111+9523..12619Monocopper oxidase precursor, putative, expressed
LOC_Os01g01040Os.27571.1.S1_at11/111+13123..17122expressed protein
LOC_Os01g01040Os.18676.1.S1_x_at2/111+13123..17122expressed protein
LOC_Os01g01050Os.27637.1.S1_at11/111+19643..23696R3H domain containing protein, expressed
LOC_Os01g01050Os.51208.1.S1_s_at1/111+19643..23696R3H domain containing protein, expressed
LOC_Os01g01060Os.4725.1.S1_at11/111+23940..2543740S ribosomal protein S5, putative, expressed
LOC_Os01g01070Os.26562.1.S1_at11/111+26620..31295expressed protein
LOC_Os01g01070Os.46612.1.S1_x_at9/111+26620..31295expressed protein
LOC_Os01g01080Os.21356.1.S1_at11/111+32416..37981Sphingosine-1-phosphate lyase, putative, expressed
LOC_Os01g01090NANA1+41397..44328retrotransposon protein, putative, unclassified
LOC_Os01g01100NANA1+44658..50214retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01110OsAffx.30714.2.S1_s_at11/111+52716..54774hypothetical protein
LOC_Os01g01110OsAffx.12972.1.S1_at1/111+52716..54774hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26562.1.S1_at--315--7431Chr01:30778..30802 (25 bp)
GTGTTTTGAGCCGAGCAAGTTCTAT
LOC_Os01g01070
Os.26562.1.S1_at--193--8931Chr01:30784..30808 (25 bp)
TGAGCCGAGCAAGTTCTATGAAAGA
LOC_Os01g01070
Os.26562.1.S1_at--479--8971Chr01:30802..30826 (25 bp)
TGAAAGAAGGATCCCAGGAGCTATC
LOC_Os01g01070
Os.26562.1.S1_at--355--8211Chr01:30865..30889 (25 bp)
GGAATGTTCCAAATTCAAGACTGTT
LOC_Os01g01070
Os.26562.1.S1_at--815--6711Chr01:30913..30937 (25 bp)
GTTCTGCCAGTTGAGATACATGGCA
LOC_Os01g01070
Os.26562.1.S1_at--217--8291Chr01:30934..30958 (25 bp)
GGCATTGTCATGGTTTTACCCAAAG
LOC_Os01g01070
Os.26562.1.S1_at--679--8191Chr01:31053..31077 (25 bp)
GGAAGTGCCAATTTTTTGTAGAAAT
LOC_Os01g01070
Os.26562.1.S1_at--1077--1331Chr01:31112..31136 (25 bp)
AGAGATATACTGTTTGTCGGTTGTG
LOC_Os01g01070
Os.26562.1.S1_at--165--2791Chr01:31165..31189 (25 bp)
AAGAGACACCTGATTGCGTCTTGTT
LOC_Os01g01070
Os.26562.1.S1_at--605--6591Chr01:31176..31200 (25 bp)
GATTGCGTCTTGTTGCAGCAAGTTT
LOC_Os01g01070
Os.26562.1.S1_at--781--151Chr01:31248..31272 (25 bp)
ATTATGGCACATTTGCATGCTTTGG
LOC_Os01g01070
Target Sequence 
GTGTTTTGAGCCGAGCAAGTTCTATGAAAGAAGGATCCCAGGAGCTATCAAATGGGTCATCAAGTTCAGGGGAACCAACC
ACTGGGAGGAATGTTCCAAATTCAAGACTGTTTGGAGGGTTTGGTTTTTTGAAGAGTTCTGCCAGTTGAGATACATGGCA
TTGTCATGGTTTTACCCAAAGGAGTTGGANNNANNNTTACGTGTATATGTATTGCTAGCNACTAGGTGCCAGTANAANAA
NANNCAGTTGCCCCATGGCATCACTTTCNCCTATTGGAAGTGCCAATTTTTTGTAGAAATTAATTAATCTATATACCAAA
TACAAATGCATTGCAGAGATATACTGTTTGTCGGTTGTGNTTGTAAAAAAAAANCTCGTAGGGGCAGAAAGAGACACCTG
ATTGCGTCTTGTTGCAGCAAGTTTGTTTGGGGAGGATGTACTGGAATAAGGGTATAGTAGTAGTAGGAATTATTATGGCA
CATTTGCATGCTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis