Browse Element(s) Details


OsAffx.30714.2.S1_s_at

Description gb:NM_183436.1
DB_XREF= gi:34893999
GEN=P0672D08.10
TID=OsAffx.30714.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0672D08.10 (P0672D08.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0111011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01070Os.26562.1.S1_at11/111+26620..31295expressed protein
LOC_Os01g01070Os.46612.1.S1_x_at9/111+26620..31295expressed protein
LOC_Os01g01080Os.21356.1.S1_at11/111+32416..37981Sphingosine-1-phosphate lyase, putative, expressed
LOC_Os01g01090NANA1+41397..44328retrotransposon protein, putative, unclassified
LOC_Os01g01100NANA1+44658..50214retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01110OsAffx.30714.2.S1_s_at11/111+52716..54774hypothetical protein
LOC_Os01g01110OsAffx.12972.1.S1_at1/111+52716..54774hypothetical protein
LOC_Os01g01120Os.13225.1.S2_at11/111+57287..623392,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os01g01120Os.13225.1.S1_a_at11/111+57287..623392,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os01g01130Os.45872.1.S1_at11/111+60472..62466RNA, U transporter 1, putative, expressed
LOC_Os01g01140OsAffx.23084.1.S1_at11/111+66477..66933hypothetical protein
LOC_Os01g01150Os.15960.1.S1_a_at11/111+69618..74501Filamin/ABP280 repeat family protein, expressed
LOC_Os01g01160Os.5648.1.S1_at11/111+79309..81090Chaperone protein dnaJ 20, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009934biological_processregulation of meristem organization
GO:0030154biological_processcell differentiation
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30714.2.S1_s_at--770--4591Chr01:54185..54209 (25 bp)
GCGACAAGTGCGACATGTTCAGCTT
LOC_Os01g01110
OsAffx.30714.2.S1_s_at--260--1431Chr01:54330..54354 (25 bp)
AGAACAGCACAGTCTCAGGCTGCTT
LOC_Os01g01110
OsAffx.30714.2.S1_s_at--974--6011Chr01:54370..54394 (25 bp)
GAGAGTCGTCGAGGCAAATCCTTCC
LOC_Os01g01110
OsAffx.30714.2.S1_s_at--732--6191Chr01:54380..54404 (25 bp)
GAGGCAAATCCTTCCAAGTCTCTGC
LOC_Os01g01110
OsAffx.30714.2.S1_s_at--1017--1031Chr01:54414..54438 (25 bp)
AGGTCCTGCCGGCTATGCCGTCGAA
LOC_Os01g01110
OsAffx.30714.2.S1_s_at--665--1051Chr01:54474..54498 (25 bp)
AGGTGGATTACTACGCGTCGACCCA
LOC_Os01g01110
OsAffx.30714.2.S1_s_at--136--7231Chr01:54490..54514 (25 bp)
GTCGACCCAGCCAAAGAAGCCAGAG
LOC_Os01g01110
OsAffx.30714.2.S1_s_at--846--4511Chr01:54520..54544 (25 bp)
GCCGACGGTCACAGCAGTCCAAAAG
LOC_Os01g01110
OsAffx.30714.2.S1_s_at--974--1511Chr01:54532..54556 (25 bp)
AGCAGTCCAAAAGGATTGCGCCCCA
LOC_Os01g01110
OsAffx.30714.2.S1_s_at--678--491Chr01:54615..54639 (25 bp)
ATCGACGTCTCCTCCTTGGAAGGAG
LOC_Os01g01110
OsAffx.30714.2.S1_s_at--755--7411Chr01:54659..54683 (25 bp)
GTGTTGTGCCTTTGAAGCAGCCTTC
LOC_Os01g01110
Target Sequence 
GCGACAAGTGCGACATGTTCAGCTTCGGGGTGGTGTTAATTGCTGGATATGGTGACGGGGCGGAAGCCGGTGAGCAGCCG
CCATGGACGACAGGGCACGGTGGTGGTGGTGGTGGTCCTGCGCGACTACGTGAGGGAGATGGTGGAGAACAGCACAGTCT
CAGGCTGCTTCGACCTGAGCATGAGGAGAGTCGTCGAGGCAAATCCTTCCAAGTCTCTGCCGGCGGCGTAGGTCCTGCCG
GCTATGCCGTCGAAGGGTGGCGCAGGGTCGCCGTCGTCGAAGGCGGTGGAGGTGGATTACTACGCGTCGACCCAGCCAAA
GAAGCCAGAGGGGCCGCCGACGGTCACAGCAGTCCAAAAGGATTGCGCCCCACCGGCGGCGCCCAAGCCGGCGGCCGCTA
CGGCACCACGATGCCCGTTCCGGCGACGCCATCGACGTCTCCTCCTTGGAAGGAGTATGCTCCGGCGGCGCCAGGTGTTG
TGCCTTTGAAGCAGCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30714.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis