Browse Element(s) Details


Os.13225.1.S1_a_at

Description gb:AK067866.1
DB_XREF= gi:32977884
TID=Os.13225.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13225 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0672D08.11 (P0672D08.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127C12, full insert sequence.
FL= gb:AK104752.1 gb:AK119457.1 gb:AK104625.1 gb:AK067866.1 gb:AK104517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0112011/112,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01080Os.21356.1.S1_at11/111+32416..37981Sphingosine-1-phosphate lyase, putative, expressed
LOC_Os01g01090NANA1+41397..44328retrotransposon protein, putative, unclassified
LOC_Os01g01100NANA1+44658..50214retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01110OsAffx.30714.2.S1_s_at11/111+52716..54774hypothetical protein
LOC_Os01g01110OsAffx.12972.1.S1_at1/111+52716..54774hypothetical protein
LOC_Os01g01120Os.13225.1.S2_at11/111+57287..623392,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os01g01120Os.13225.1.S1_a_at11/111+57287..623392,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os01g01130Os.45872.1.S1_at11/111+60472..62466RNA, U transporter 1, putative, expressed
LOC_Os01g01140OsAffx.23084.1.S1_at11/111+66477..66933hypothetical protein
LOC_Os01g01150Os.15960.1.S1_a_at11/111+69618..74501Filamin/ABP280 repeat family protein, expressed
LOC_Os01g01160Os.5648.1.S1_at11/111+79309..81090Chaperone protein dnaJ 20, chloroplast precursor, putative, expressed
LOC_Os01g01170Os.32622.2.S1_x_at11/111+82139..85646expressed protein
LOC_Os01g01170Os.32622.1.S1_at11/111+82139..85646expressed protein
LOC_Os01g01180Os.33296.2.S1_at7/111+85788..86006expressed protein
LOC_Os01g01190Os.33296.1.S1_at11/111+86565..88267phosphoesterase family protein, putative, expressed
LOC_Os01g01190Os.33296.1.S1_x_at11/111+86565..88267phosphoesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13225.1.S1_a_at--18--7731Chr01:59581..59605 (25 bp)
GGTGGCGTGCCAAGGCCTACATCTA
LOC_Os01g01120
Os.13225.1.S1_a_at--999--872Chr03:23556776..23556800 (25 bp)
AGGCCTACATCTACTCCAGCGGAAG
NONE
Os.13225.1.S1_a_at--477--4391Chr01:59799..59823 (25 bp)
GCCAAGCGCGAGGTTAGCAGCTACT
LOC_Os01g01120
Os.13225.1.S1_a_at--208--4851Chr01:59818..59842 (25 bp)
GCTACTACGAGATCTGGCAGACTCT
LOC_Os01g01120
Os.13225.1.S1_a_at--113--1291Chr01:59863..59887 (25 bp)
AGATCCTCTTCTTGACAGACGTCTA
LOC_Os01g01120
Os.13225.1.S1_a_at--144--1391Chr01:59879..59903 (25 bp)
AGACGTCTACCAAGAAGCCGCTGCA
LOC_Os01g01120
Os.13225.1.S1_a_at--502--3411Chr01:59902..60059 (25 bp)
CAGCAAAGACTGCAGGCCTTGAGGT
LOC_Os01g01120
Os.13225.1.S1_a_at--25--10171Chr01:60065..60089 (25 bp)
TATCTGTCAGGCCTGGAAACGCACC
LOC_Os01g01120
Os.13225.1.S1_a_at--1101--1771Chr01:60087..60111 (25 bp)
ACCCCTCCCTGATAATCATGGTTTT
LOC_Os01g01120
Os.13225.1.S1_a_at--492--6811Chr01:60107..60131 (25 bp)
GTTTTCACACAATCACATCATTCGC
LOC_Os01g01120
Os.13225.1.S1_a_at--1094--3551Chr01:60122..60146 (25 bp)
CATCATTCGCTGAAATCTCCATCTG
LOC_Os01g01120
Target Sequence 
GGTGGCGTGCCAAGGCCTACATCTACTCCAGCGGAAGCAGGGAGGCCCAGCGCCTCATCTTCGCCAACACCGCTGCACAC
GGCGATCTCCGCGACCACCTCTGCGGATTCTTCGACACCACAATAGGGGCCAAGCGCGAGGTTAGCAGCTACTACGAGAT
CTGGCAGACTCTGGGCACGGACCGCCCCTCCCAGATCCTCTTCTTGACAGACGTCTACCAAGAAGCCGCTGCAGCAAAGA
CTGCAGGCCTTGAGGTGATAATATCTGTCAGGCCTGGAAACGCACCCCTCCCTGATAATCATGGTTTTCACACAATCACA
TCATTCGCTGAAATCTCCATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13225.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis