Browse Element(s) Details


OsAffx.23084.1.S1_at

Description tigr:9629.m00015
TID=OsAffx.23084.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0114011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01090NANA1+41397..44328retrotransposon protein, putative, unclassified
LOC_Os01g01100NANA1+44658..50214retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01110OsAffx.30714.2.S1_s_at11/111+52716..54774hypothetical protein
LOC_Os01g01110OsAffx.12972.1.S1_at1/111+52716..54774hypothetical protein
LOC_Os01g01120Os.13225.1.S2_at11/111+57287..623392,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os01g01120Os.13225.1.S1_a_at11/111+57287..623392,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os01g01130Os.45872.1.S1_at11/111+60472..62466RNA, U transporter 1, putative, expressed
LOC_Os01g01140OsAffx.23084.1.S1_at11/111+66477..66933hypothetical protein
LOC_Os01g01150Os.15960.1.S1_a_at11/111+69618..74501Filamin/ABP280 repeat family protein, expressed
LOC_Os01g01160Os.5648.1.S1_at11/111+79309..81090Chaperone protein dnaJ 20, chloroplast precursor, putative, expressed
LOC_Os01g01170Os.32622.2.S1_x_at11/111+82139..85646expressed protein
LOC_Os01g01170Os.32622.1.S1_at11/111+82139..85646expressed protein
LOC_Os01g01180Os.33296.2.S1_at7/111+85788..86006expressed protein
LOC_Os01g01190Os.33296.1.S1_at11/111+86565..88267phosphoesterase family protein, putative, expressed
LOC_Os01g01190Os.33296.1.S1_x_at11/111+86565..88267phosphoesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23084.1.S1_at--1098--9251Chr01:66627..66651 (25 bp)
TCCTCCCAAATTACTTATGGCCTCA
LOC_Os01g01140
OsAffx.23084.1.S1_at--505--10451Chr01:66637..66661 (25 bp)
TTACTTATGGCCTCACCATACACCA
LOC_Os01g01140
OsAffx.23084.1.S1_at--294--2171Chr01:66656..66680 (25 bp)
ACACCACGCCGTGACAGAATCGGAG
LOC_Os01g01140
OsAffx.23084.1.S1_at--571--491Chr01:66674..66698 (25 bp)
ATCGGAGAAGACAGTGGCTTCCTCA
LOC_Os01g01140
OsAffx.23084.1.S1_at--693--1091Chr01:66686..66710 (25 bp)
AGTGGCTTCCTCAGCCGCGATAGAG
LOC_Os01g01140
OsAffx.23084.1.S1_at--491--1671Chr01:66698..66722 (25 bp)
AGCCGCGATAGAGCCGAAGAAGATG
LOC_Os01g01140
OsAffx.23084.1.S1_at--839--5351Chr01:66716..66740 (25 bp)
GAAGATGTCGCATGCTCCTATAGTT
LOC_Os01g01140
OsAffx.23084.1.S1_at--325--631Chr01:66727..66751 (25 bp)
ATGCTCCTATAGTTGATGCCCACAT
LOC_Os01g01140
OsAffx.23084.1.S1_at--935--8851Chr01:66740..66764 (25 bp)
TGATGCCCACATCGAAGACACCCAG
LOC_Os01g01140
OsAffx.23084.1.S1_at--692--5371Chr01:66680..66841 (25 bp)
GAAGACACCCAGTGGCATTGGCATC
LOC_Os01g01140
OsAffx.23084.1.S1_at--407--1091Chr01:66827..66851 (25 bp)
AGTGGCATTGGCATCCACGTTGGTG
LOC_Os01g01140
Target Sequence 
TCCTCCCAAATTACTTATGGCCTCACCATACACCACGCCGTGACAGAATCGGAGAAGACAGTGGCTTCCTCAGCCGCGAT
AGAGCCGAAGAAGATGTCGCATGCTCCTATAGTTGATGCCCACATCGAAGACACCCAGTGGCATTGGCATCCACGTTGGT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis