Browse Element(s) Details


Os.33296.2.S1_at

Description gb:NM_183444.1
DB_XREF= gi:34894015
GEN=P0672D08.18
TID=Os.33296.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33296 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0672D08.18 (P0672D08.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0672D08.18 (P0672D08.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g011807/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01120Os.13225.1.S2_at11/111+57287..623392,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os01g01120Os.13225.1.S1_a_at11/111+57287..623392,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os01g01130Os.45872.1.S1_at11/111+60472..62466RNA, U transporter 1, putative, expressed
LOC_Os01g01140OsAffx.23084.1.S1_at11/111+66477..66933hypothetical protein
LOC_Os01g01150Os.15960.1.S1_a_at11/111+69618..74501Filamin/ABP280 repeat family protein, expressed
LOC_Os01g01160Os.5648.1.S1_at11/111+79309..81090Chaperone protein dnaJ 20, chloroplast precursor, putative, expressed
LOC_Os01g01170Os.32622.2.S1_x_at11/111+82139..85646expressed protein
LOC_Os01g01170Os.32622.1.S1_at11/111+82139..85646expressed protein
LOC_Os01g01180Os.33296.2.S1_at7/111+85788..86006expressed protein
LOC_Os01g01190Os.33296.1.S1_at11/111+86565..88267phosphoesterase family protein, putative, expressed
LOC_Os01g01190Os.33296.1.S1_x_at11/111+86565..88267phosphoesterase family protein, putative, expressed
LOC_Os01g01200Os.53479.1.S1_x_at2/111+92301..95360transposon protein, putative, unclassified
LOC_Os01g01210NANA1+95973..97483retrotransposon protein, putative, unclassified
LOC_Os01g01230NANA1+102674..103336transposon protein, putative, unclassified
LOC_Os01g01240OsAffx.22947.1.S1_x_at11/111+105420..111785retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01240OsAffx.22947.3.S1_x_at5/111+105420..111785retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01240OsAffx.22947.2.S1_x_at3/111+105420..111785retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01240OsAffx.22947.5.S1_x_at3/111+105420..111785retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33296.2.S1_at--54--7551NONE
GGGCCAAACGCTTAGCTAGTAGCCT
NONE
Os.33296.2.S1_at--1096--2371NONE
AAACGCTTAGCTAGTAGCCTACAAG
NONE
Os.33296.2.S1_at--1037--4791Chr01:86032..86052 (21 bp)
GCTTAGCTAGTAGCCTACAAGGAAT
NONE
Os.33296.2.S1_at--189--4211Chr01:86020..86044 (25 bp)
GCCTACAAGGAATTAGTAAGCCTGA
NONE
Os.33296.2.S1_at--571--7791Chr01:85964..85988 (25 bp)
GGTCCAGTGCTGATCGCGTTGGTCT
LOC_Os01g01180
Os.33296.2.S1_at--471--1131Chr01:85959..85983 (25 bp)
AGTGCTGATCGCGTTGGTCTTGTTC
LOC_Os01g01180
Os.33296.2.S1_at--730--531Chr01:85952..85976 (25 bp)
ATCGCGTTGGTCTTGTTCGTGCTGC
LOC_Os01g01180
Os.33296.2.S1_at--681--4631Chr01:85949..85973 (25 bp)
GCGTTGGTCTTGTTCGTGCTGCTGA
LOC_Os01g01180
Os.33296.2.S1_at--682--6671Chr01:85917..85941 (25 bp)
GTTGCTGTGCCAGATCCCCGGGAGC
LOC_Os01g01180
Os.33296.2.S1_at--816--4651Chr01:85885..85909 (25 bp)
GCGTCGCCGAGTTCCACAGCATGCG
LOC_Os01g01180
Os.33296.2.S1_at--596--9331Chr01:85819..85843 (25 bp)
TCGCCTTCTGCGCCATCTTCATGGT
LOC_Os01g01180
Target Sequence 
GGGCCAAACGCTTAGCTAGTAGCCTACAAGGAATTAGTAAGCCTGAGAAGAAGAAGAAGATGGGGTCTGGTGATTGGGGT
CCAGTGCTGATCGCGTTGGTCTTGTTCGTGCTGCTGACGCCGGGGTTGCTGTGCCAGATCCCCGGGAGCAACGGCCGCGT
CGCCGAGTTCCACAGCATGCGCACCAGCGTCGCCTCCATCTTCGTCCACGCCCTCCTCTTCTTCGCCTTCTGCGCCATCT
TCATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33296.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis