Browse Element(s) Details


Os.5648.1.S1_at

Description gb:AU172533
DB_XREF= gi:12622320
DB_XREF=AU172533
CLONE=E2155
TID=Os.5648.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5648 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0672D08.16 (P0672D08.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0116011/11Chaperone protein dnaJ 20, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01110OsAffx.30714.2.S1_s_at11/111+52716..54774hypothetical protein
LOC_Os01g01110OsAffx.12972.1.S1_at1/111+52716..54774hypothetical protein
LOC_Os01g01120Os.13225.1.S2_at11/111+57287..623392,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os01g01120Os.13225.1.S1_a_at11/111+57287..623392,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os01g01130Os.45872.1.S1_at11/111+60472..62466RNA, U transporter 1, putative, expressed
LOC_Os01g01140OsAffx.23084.1.S1_at11/111+66477..66933hypothetical protein
LOC_Os01g01150Os.15960.1.S1_a_at11/111+69618..74501Filamin/ABP280 repeat family protein, expressed
LOC_Os01g01160Os.5648.1.S1_at11/111+79309..81090Chaperone protein dnaJ 20, chloroplast precursor, putative, expressed
LOC_Os01g01170Os.32622.2.S1_x_at11/111+82139..85646expressed protein
LOC_Os01g01170Os.32622.1.S1_at11/111+82139..85646expressed protein
LOC_Os01g01180Os.33296.2.S1_at7/111+85788..86006expressed protein
LOC_Os01g01190Os.33296.1.S1_at11/111+86565..88267phosphoesterase family protein, putative, expressed
LOC_Os01g01190Os.33296.1.S1_x_at11/111+86565..88267phosphoesterase family protein, putative, expressed
LOC_Os01g01200Os.53479.1.S1_x_at2/111+92301..95360transposon protein, putative, unclassified
LOC_Os01g01210NANA1+95973..97483retrotransposon protein, putative, unclassified
LOC_Os01g01230NANA1+102674..103336transposon protein, putative, unclassified
LOC_Os01g01240OsAffx.22947.1.S1_x_at11/111+105420..111785retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01240OsAffx.22947.3.S1_x_at5/111+105420..111785retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01240OsAffx.22947.2.S1_x_at3/111+105420..111785retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01240OsAffx.22947.5.S1_x_at3/111+105420..111785retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5648.1.S1_at--984--5431Chr01:80641..80665 (25 bp)
GAACCGAAACATCATCCTCTGAGTA
LOC_Os01g01160
Os.5648.1.S1_at--882--7051Chr01:80663..80687 (25 bp)
GTAACTGTGATCGTAATGCTTCCAA
LOC_Os01g01160
Os.5648.1.S1_at--610--411Chr01:80678..80702 (25 bp)
ATGCTTCCAAAGTGTAACCCTAGTG
LOC_Os01g01160
Os.5648.1.S1_at--293--7511Chr01:80700..80724 (25 bp)
GTGGTATATCTTTTGCATCAGCTAA
LOC_Os01g01160
Os.5648.1.S1_at--554--4731Chr01:80766..80790 (25 bp)
GCTGTGCTGGTATTAAGCTGTGCAT
LOC_Os01g01160
Os.5648.1.S1_at--1041--1611Chr01:80781..80805 (25 bp)
AGCTGTGCATTTTGTATTTACTCCT
LOC_Os01g01160
Os.5648.1.S1_at--771--6331Chr01:80815..80839 (25 bp)
GATGCGGCAACCCTATGCACAAGGA
LOC_Os01g01160
Os.5648.1.S1_at--517--2931Chr01:80835..80859 (25 bp)
AAGGAATGCTAAGCACTCCTCTACT
LOC_Os01g01160
Os.5648.1.S1_at--1135--6871Chr01:80931..80955 (25 bp)
GTATACCCAACCCAAGCTATGAATG
LOC_Os01g01160
Os.5648.1.S1_at--208--10211Chr01:80985..81009 (25 bp)
TATTTGCGTAGGAGGCTCTGCGTTT
LOC_Os01g01160
Os.5648.1.S1_at--117--4031Chr01:81005..81029 (25 bp)
CGTTTCCTTGTGTGCTCTAGTGTAA
LOC_Os01g01160
Target Sequence 
GAACCGAAACATCATCCTCTGAGTAACTGTGATCGTAATGCTTCCAAAGTGTAACCCTAGTGGTATATCTTTTGCATCAG
CTAAATTATCATAAGCTGTTAACAAGTGCAAGGTTAGAAGGGTGTGCTGTGCTGGTATTAAGCTGTGCATTTTGTATTTA
CTCCTANAAAAGATGATGCGGCAACCCTATGCACAAGGAATGCTAAGCACTCCTCTACTATAGATATTAGTGGCCATTCT
AGTGGTGGCATAGTTAGAAGCCCGTATGGGGGTATTTGTGTCAGTATACTGTATACCCAACCCAAGCTATGAATGAACGA
TGAAGTGNCCAAGTATGATGTGTATATTTGCGTAGGAGGCTCTGCGTTTCCTTGTGTGCTCTAGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis