Browse Element(s) Details


Os.45872.1.S1_at

Description gb:BE040171
DB_XREF= gi:8335187
DB_XREF=OD103E11
TID=Os.45872.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0672D08.12 (P0672D08.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0113011/11RNA, U transporter 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01080Os.21356.1.S1_at11/111+32416..37981Sphingosine-1-phosphate lyase, putative, expressed
LOC_Os01g01090NANA1+41397..44328retrotransposon protein, putative, unclassified
LOC_Os01g01100NANA1+44658..50214retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01110OsAffx.30714.2.S1_s_at11/111+52716..54774hypothetical protein
LOC_Os01g01110OsAffx.12972.1.S1_at1/111+52716..54774hypothetical protein
LOC_Os01g01120Os.13225.1.S2_at11/111+57287..623392,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os01g01120Os.13225.1.S1_a_at11/111+57287..623392,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os01g01130Os.45872.1.S1_at11/111+60472..62466RNA, U transporter 1, putative, expressed
LOC_Os01g01140OsAffx.23084.1.S1_at11/111+66477..66933hypothetical protein
LOC_Os01g01150Os.15960.1.S1_a_at11/111+69618..74501Filamin/ABP280 repeat family protein, expressed
LOC_Os01g01160Os.5648.1.S1_at11/111+79309..81090Chaperone protein dnaJ 20, chloroplast precursor, putative, expressed
LOC_Os01g01170Os.32622.2.S1_x_at11/111+82139..85646expressed protein
LOC_Os01g01170Os.32622.1.S1_at11/111+82139..85646expressed protein
LOC_Os01g01180Os.33296.2.S1_at7/111+85788..86006expressed protein
LOC_Os01g01190Os.33296.1.S1_at11/111+86565..88267phosphoesterase family protein, putative, expressed
LOC_Os01g01190Os.33296.1.S1_x_at11/111+86565..88267phosphoesterase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45872.1.S1_at--871--2211Chr01:61467..61488 (22 bp)
ACAAGTCCCAAGTGAGCAGCATATT
LOC_Os01g01130
Os.45872.1.S1_at--247--6171Chr01:61191..61215 (25 bp)
GAGGATGGAAAGCTTACTACTTCTG
LOC_Os01g01130
Os.45872.1.S1_at--695--711Chr01:61166..61190 (25 bp)
ATGATCCTCCAGTTGTCTTTGGTAG
LOC_Os01g01130
Os.45872.1.S1_at--930--10511Chr01:60806..61148 (25 bp)
TTCAGAAGTCAAACCTGCGGCCAGG
LOC_Os01g01130
Os.45872.1.S1_at--161--8391Chr01:60788..60812 (25 bp)
GGCCAGGGAATCTTCTTCGCTTTGC
LOC_Os01g01130
Os.45872.1.S1_at--423--8511Chr01:60700..60724 (25 bp)
TGGAAAGCCGAATCGTGCTCGTGCT
LOC_Os01g01130
Os.45872.1.S1_at--270--511Chr01:60689..60713 (25 bp)
ATCGTGCTCGTGCTTTTGCTGACAG
LOC_Os01g01130
Os.45872.1.S1_at--478--10711Chr01:60678..60698 (21 bp)
TTGCTGACAGCCACTCGAAAGCTTT
LOC_Os01g01130
Os.45872.1.S1_at--377--2351Chr01:60564..60585 (22 bp)
AAAGCTTTGTTCCAGTACGCTGCTA
LOC_Os01g01130
Os.45872.1.S1_at--178--9091Chr01:60544..60568 (25 bp)
TGCTAGGCATGCTCCTCTGAGAATT
LOC_Os01g01130
Os.45872.1.S1_at--91--471Chr01:60515..60539 (25 bp)
ATCTCGTTGCCTCGATTCAGTCAAA
LOC_Os01g01130
Target Sequence 
ACAAGTCCCAAGTGAGCAGCATATTGTGCTGGATCTGCAAGAGGATGGAAAGCTTACTACTTCTGATGATCCTCCAGTTG
TCTTTGGTAGCTTGGACAATGAATTCATTCAGAAGTCAAACCTGCGGCCAGGGAATCTTCTTCGCTTTGCTGTCAAAGAT
GAAAGAGTGAAACTTGTGGATGGAAAGATGGAGATTAGTGAGCTTCAATTTGTTGGAAAGCCGAATCGTGCTCGTGCTTT
TGCTGACAGCCACTCGAAAGCTTTGTTCCAGTACGCTGCTAGGCATGCTCCTCTGAGAATTGAGGATCTCGTTGCCTCGA
TTCAGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis