Browse Element(s) Details


Os.26565.3.S1_at

Description gb:AK112091.1
DB_XREF= gi:37988754
TID=Os.26565.3
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26565 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative HD-zip transcription factor (B1015E06.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-A01, full insert sequence.
FL= gb:AK112091.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1032011/11class III HD-Zip protein 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10260OsAffx.22146.1.S1_x_at11/111+5398203..5398817expressed protein
LOC_Os01g10270Os.29966.1.S1_at2/111+5400104..5401369hypothetical protein
LOC_Os01g10280Os.14917.2.S1_x_at11/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.1.S1_x_at11/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.2.S1_at10/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.1.S1_at10/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10290Os.27665.1.S1_at11/111+5410397..5413668Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os01g10300OsAffx.23184.1.S1_at11/111+5413986..5415547expressed protein
LOC_Os01g10310OsAffx.1977.1.S1_x_at10/111+5420861..5421373hypothetical protein
LOC_Os01g10320Os.26565.3.S1_at11/111+5423343..5427416class III HD-Zip protein 6, putative, expressed
LOC_Os01g10340Os.6428.1.S1_at10/111+5432245..5439448expressed protein
LOC_Os01g10340OsAffx.12165.1.S1_at1/111+5432245..5439448expressed protein
LOC_Os01g10350Os.35261.1.S1_at11/111+5439668..5443048MPPN domain containing protein, expressed
LOC_Os01g10370Os.50646.1.S1_s_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10370Os.55837.1.S1_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10370Os.55837.1.S1_x_at11/111+5451574..5452493AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008284biological_processpositive regulation of cell proliferation
GO:0009733biological_processresponse to auxin stimulus
GO:0009855biological_processdetermination of bilateral symmetry
GO:0009887biological_processorgan morphogenesis
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0009955biological_processadaxial/abaxial pattern formation
GO:0009956biological_processradial pattern formation
GO:0009965biological_processleaf morphogenesis
GO:0010014biological_processmeristem initiation
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010072biological_processprimary shoot apical meristem specification
GO:0010073biological_processmeristem maintenance
GO:0010075biological_processregulation of meristem size
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0010089biological_processxylem histogenesis
GO:0030154biological_processcell differentiation
GO:0045597biological_processpositive regulation of cell differentiation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26565.3.S1_at--979--10511Chr01:5424217..5424241 (25 bp)
TTCACATTTGCAAACCAGTCTGGCC
LOC_Os01g10320
Os.26565.3.S1_at--284--5671Chr01:5424190..5424214 (25 bp)
GACATGCTCGAAACAACTCTGGTGG
LOC_Os01g10320
Os.26565.3.S1_at--444--9471Chr01:5424173..5424197 (25 bp)
TCTGGTGGCGCTCCAAGACATGACG
LOC_Os01g10320
Os.26565.3.S1_at--708--8191Chr01:5424120..5424144 (25 bp)
GGAAGAACCTGTGCACAGAGCTCCC
LOC_Os01g10320
Os.26565.3.S1_at--719--1371Chr01:5424104..5424128 (25 bp)
AGAGCTCCCCAACATCATGGAGCAG
LOC_Os01g10320
Os.26565.3.S1_at--60--4911Chr01:5423522..5423546 (25 bp)
GCTTCATGTTCATCAACTGGACCTT
LOC_Os01g10320
Os.26565.3.S1_at--795--3891Chr01:5423506..5423530 (25 bp)
CTGGACCTTCCTTTGATTTCATTTC
LOC_Os01g10320
Os.26565.3.S1_at--467--6531Chr01:5423492..5423516 (25 bp)
GATTTCATTTCATTATACACCCCAA
LOC_Os01g10320
Os.26565.3.S1_at--451--331Chr01:5423478..5423502 (25 bp)
ATACACCCCAATGCAAAACGGATAT
LOC_Os01g10320
Os.26565.3.S1_at--583--3971Chr01:5423375..5423399 (25 bp)
CGGTGCTAGTTTTTGTACGGATCGA
LOC_Os01g10320
Os.26565.3.S1_at--491--10071Chr01:5423350..5423374 (25 bp)
TAGTGGATACATTCTCTGTTCGGAG
LOC_Os01g10320
Target Sequence 
TTCACATTTGCAAACCAGTCTGGCCTNGACATGCTCGAAACAACTCTGGTGGCGCTCCAAGACATGACGCTGGAGAAAGT
TTTCGACGATCAAGGGAGGAAGAACCTGTGCACAGAGCTCCCCAACATCATGGAGCAGGGGATGGCGTGCATGGAGGGAG
GGGTGTGCGTGTCGAGCGTTGGGAGGGCGGCGTCGTACGAGAAGGCGGTGGCGTGGAAGGTGGTCGACGGCGACGGCGGC
GGCGCCCACTGCATCTGCTTCATGTTCATCAACTGGACCTTCCTTTGATTTCATTTCATTATACACCCCAATGCAAAACG
GATATATAANNTTACAANCTAGTGCAATTTACGTACGTAATCTCATGAAACAGCGTGTACAAATGTTTTGGATTTTGAGA
ACCNCGGTGCTAGTTTTTGTACGGATCGATAGTGGATACATTCTCTGTTCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26565.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis