Browse Element(s) Details


Os.26592.2.A1_x_at

Description gb:AK062456.1
DB_XREF= gi:32972474
TID=Os.26592.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Photosystem II P680 chlorophyll A apoprotein (OSJNAb0075K12.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-C10, full insert sequence.
FL= gb:AK062456.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1526010/11Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os10g213107/11Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os12g106004/11Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g046804/11Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os06g397103/11Photosystem II P680 chlorophyll A apoprotein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15250Os.26455.2.S1_s_at11/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32331.1.S1_x_at11/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32332.1.S1_x_at11/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32333.1.S1_x_at7/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32334.1.S1_x_at5/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15260Os.26592.2.A1_s_at11/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15260Os.26592.1.S1_s_at11/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15260Os.26592.2.A1_x_at10/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15260Os.26592.3.S1_x_at9/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15270OsAffx.32314.1.S1_at7/118+9269071..9269418ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os08g15270Os.48031.1.S1_x_at6/118+9269071..9269418ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os08g15280OsAffx.32260.1.S1_at11/118+9276495..9277418Apocytochrome f precursor, putative
LOC_Os08g15280Os.29056.1.S1_s_at8/118+9276495..9277418Apocytochrome f precursor, putative
LOC_Os08g15290NANA8+9292658..9295196retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0010207biological_processphotosystem II assembly
GO:0019684biological_processphotosynthesis, light reaction
GO:0009539cellular_componentphotosystem II reaction center
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26592.2.A1_x_at--173--6634Chr12:5646392..5646416 (25 bp)
GTTGGTTCACTTTTGGTCATGCTAC
LOC_Os12g10600
Os.26592.2.A1_x_at--788--5415Chr12:5646461..5646485 (25 bp)
GAACCTTGTTCCGAGATGTTTTTGC
LOC_Os12g10600
Os.26592.2.A1_x_at--448--8155Chr12:5646523..5646547 (25 bp)
GGAACATTCCAAAAAGTCGGAGATC
LOC_Os12g10600
Os.26592.2.A1_x_at--516--2856Chr12:5646536..5646560 (25 bp)
AAGTCGGAGATCCAACTACGAGGAG
LOC_Os12g10600
Os.26592.2.A1_x_at--898--9317Chr12:5646631..5646655 (25 bp)
TCCCATCCCTTCTTTGACTCTTTTT
NONE
Os.26592.2.A1_x_at--649--257Chr12:5646664..5646688 (25 bp)
ATACGGGAAATGATCCCAAATGACA
NONE
Os.26592.2.A1_x_at--424--538Chr12:6487760..6487784 (25 bp)
ATCCCAAATGACAAATGAATAGGTG
NONE
Os.26592.2.A1_x_at--31--298Chr12:5646694..5646718 (25 bp)
ATAGGTGTGGAAGTTATAATTGTAA
NONE
Os.26592.2.A1_x_at--524--4055Chr12:5646727..5646751 (25 bp)
CGATCGAATCTATGGAAGCATTGGT
NONE
Os.26592.2.A1_x_at--1037--4917Chr12:5646744..5646768 (25 bp)
GCATTGGTTTATACGTTCCTTTTAG
NONE
Os.26592.2.A1_x_at--578--10376Chr10:10546269..10546293 (25 bp)
TTTTTTCGCTATCTTCTTCCGAGAA
NONE
Target Sequence 
GTTGGTTCACTTTTGGTCATGCTACCTTTGCTTTGCTCNTCTTTTTCGGACACATTTGGCATGGGGCTAGAACCTTGTTC
CGAGATGTTTTTGCTGGTATTGATCCAGACTTGGATGCTCAAGTGGAATTTGGAACATTCCAAAAAGTCGGAGATCCAAC
TACGAGGAGACAGCCAGTCTGAGNCCGCATTGCTTTGGTATCTTTCACCTNTCTTTTNTTGATTNGACNATNGGGAAACA
TCTCCCATCCCTTCTTTGACTCTTTTTCCTTTTTTATACGGGAAATGATCCCAAATGACAAATGAATAGGTGTGGAAGTT
ATAATTGTAAATAAACCNCGATCGAATCTATGGAAGCATTGGTTTATACGTTCCTTTTAGTTTCGACTTTAGGGATAATT
TTTTTCGCTATCTTCTTCCGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26592.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis