Browse Element(s) Details


Os.26596.1.S1_s_at

Description gb:NM_195998.1
DB_XREF= gi:37533355
TID=Os.26596.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26596 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative NADH dehydrogenase 49kDa protein (OSJNAb0075K12.32), mRNA.
PROD=putative NADH dehydrogenase 49kDa protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1672011/11ribosomal protein S15 containing protein
LOC_Os07g4130011/11Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os10g2134011/11NAD, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16680Os.12696.1.S1_at10/114+9054999..9057731Sedoheptulose-1,7-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os04g16690OsAffx.26048.1.S1_at11/114+9061173..9062040hypothetical protein
LOC_Os04g16700Os.45173.1.S1_x_at1/114+9064905..9066756retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16710NANA4+9068679..9069332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16720OsAffx.32221.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720Os.26596.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32220.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32219.1.S1_x_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32241.1.S1_x_at10/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16730Os.46404.1.S1_x_at5/114+9089112..9089957Photosystem Q, putative
LOC_Os04g16740OsAffx.30475.3.S1_s_at11/114+9103443..9105093ATP synthase alpha chain, putative, expressed
LOC_Os04g16750OsAffx.32212.1.S1_x_at11/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16750Os.26751.2.S1_at11/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16750OsAffx.32213.1.S1_s_at11/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16750OsAffx.32213.1.S1_x_at6/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16760OsAffx.32214.1.S1_x_at11/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16760Os.26751.1.S1_s_at9/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006412biological_processprotein biosynthesis
GO:0009772biological_processphotosynthetic electron transport in photosystem II
GO:0045333biological_processcellular respiration
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003735molecular_functionstructural constituent of ribosome
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0003959molecular_functionNADPH dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26596.1.S1_s_at--1020--736Chr10:10577602..10577626 (25 bp)
ATGTTACGAGCTTCTGGAATACAAT
LOC_Os10g21340
Os.26596.1.S1_s_at--106--5937Chr10:10577609..10577633 (25 bp)
GAGCTTCTGGAATACAATGGGATCT
LOC_Os10g21340
Os.26596.1.S1_s_at--526--2176Chr10:10577622..10577646 (25 bp)
ACAATGGGATCTTCGTAAAGTTGAT
LOC_Os10g21340
Os.26596.1.S1_s_at--569--2337Chr10:10577638..10577662 (25 bp)
AAAGTTGATCTTTACGAGTCTTACA
LOC_Os10g21340
Os.26596.1.S1_s_at--366--6416Chr10:10577644..10577668 (25 bp)
GATCTTTACGAGTCTTACAATCAAT
LOC_Os10g21340
Os.26596.1.S1_s_at--201--10436Chr10:10577649..10577673 (25 bp)
TTACGAGTCTTACAATCAATTCGAT
LOC_Os10g21340
Os.26596.1.S1_s_at--621--7676Chr10:10577699..10577723 (25 bp)
GGGATTCATTAGCACGCTATTTAGT
LOC_Os10g21340
Os.26596.1.S1_s_at--464--3335Chr10:10577711..10577735 (25 bp)
CACGCTATTTAGTACGAATCGGTGA
LOC_Os10g21340
Os.26596.1.S1_s_at--997--3276Chr10:10577751..10577775 (25 bp)
CAAAATTATTCAACAGGCTGTAGAA
LOC_Os10g21340
Os.26596.1.S1_s_at--573--4516Chr10:10577789..10577813 (25 bp)
GCCCTTATGAGAATTTAGAAGTCCG
LOC_Os10g21340
Os.26596.1.S1_s_at--497--8216Chr10:10577843..10577867 (25 bp)
GGAATGATTTTGAATATCGATTTCT
LOC_Os10g21340
Target Sequence 
ATGTTACGAGCTTCTGGAATACAATGGGATCTTCGTAAAGTTGATCTTTACGAGTCTTACAATCAATTCGATNGGAAAGT
CCAATGGCAAAAAGAAGGGGATTCATTAGCACGCTATTTAGTACGAATCGGTGAAATGAGGGAATCNATCAAAATTATTC
AACAGGCTGTAGAAAAAATTCCTGGGGGCCCTTATGAGAATTTAGAAGTCCGANGCTTTAAGAAAGCAAAGAATTCCGAA
TGGAATGATTTTGAATATCGATTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26596.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis