Browse Element(s) Details


Os.26685.1.A1_at

Description gb:AK065410.1
DB_XREF= gi:32975428
TID=Os.26685.1
CNT=7
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.26685 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013022P13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022P13, full insert sequence.
FL= gb:AK065410.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2801011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27969NANA4+16329668..16330075NA
LOC_Os04g27980Os.54178.1.S1_at6/114+16332670..16333988Glycosyl hydrolases family 18 protein
LOC_Os04g27990OsAffx.3924.1.S1_at11/114+16342890..16343398B3 DNA binding domain containing protein
LOC_Os04g28000OsAffx.26193.1.S1_at11/114+16344903..16346252B3 DNA binding domain containing protein
LOC_Os04g28010Os.26685.1.A1_at11/114+16348739..16355292expressed protein
LOC_Os04g28010OsAffx.24293.1.S1_at2/114+16348739..16355292expressed protein
LOC_Os04g28010OsAffx.14337.1.S1_x_at1/114+16348739..16355292expressed protein
LOC_Os04g28020Os.55704.1.S1_at11/114+16360908..16363417expressed protein
LOC_Os04g28030OsAffx.14010.1.S1_at11/114+16364252..16364767hypothetical protein
LOC_Os04g28040Os.54222.1.S1_at11/114+16365821..16371956expressed protein
LOC_Os04g28050Os.17580.1.S1_at10/114+16374570..16379041expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26685.1.A1_at--777--111Chr04:16354158..16354182 (25 bp)
ATTCTAGTCCATTTCACCAGGAGCT
LOC_Os04g28010
Os.26685.1.A1_at--620--1511Chr04:16354691..16354715 (25 bp)
AGCAGCTGCACAACTTCTCAAGGGA
LOC_Os04g28010
Os.26685.1.A1_at--825--2091Chr04:16354760..16354784 (25 bp)
ACATCCCCGAGTCGGTAGGGCTGTA
LOC_Os04g28010
Os.26685.1.A1_at--46--9171Chr04:16354788..16354812 (25 bp)
TGCCCAGCCTTCTTCTGTCAAGAGG
LOC_Os04g28010
Os.26685.1.A1_at--284--7091Chr04:16354804..16354828 (25 bp)
GTCAAGAGGCTGATCGAACCGAGCT
LOC_Os04g28010
Os.26685.1.A1_at--1041--2591Chr04:16354820..16354844 (25 bp)
AACCGAGCTCGGTGCGACGCAGTAG
LOC_Os04g28010
Os.26685.1.A1_at--542--4831Chr04:16354928..16354952 (25 bp)
GCTCACATACCAAATCTCTTGGGAT
LOC_Os04g28010
Os.26685.1.A1_at--690--2271Chr04:16354939..16354963 (25 bp)
AAATCTCTTGGGATATAGCAGCAAT
LOC_Os04g28010
Os.26685.1.A1_at--1014--8871Chr04:16354987..16355011 (25 bp)
TGAGGTTGTAGGTGCTGATTTATTC
LOC_Os04g28010
Os.26685.1.A1_at--118--651Chr04:16355038..16355062 (25 bp)
ATGCATTATAGATTGCTCTGTAAAC
LOC_Os04g28010
Os.26685.1.A1_at--1159--1011Chr04:16355128..16355152 (25 bp)
AGGTAGCTGCGGATTGAATTCTGTT
LOC_Os04g28010
Target Sequence 
ATTCTAGTCCATTTCACCAGGAGCTGGTGGAGAAGACCAGAATCCAAGTTCAGCAGCTGCACAACTTCTCAAGGGAGCAG
CAGGGGATGCCTGGCCCGACAACGGCGAAGGCNGACCTCGACATCCCCGAGTCGGTAGGGCTGTANGCTGCCCAGCCTTC
TTCTGTCAAGAGGCTGATCGAACCGAGCTCGGTGCGACGCAGTAGCAGGAGNCGGCTATCCTGACAAAAATCCTGANNTG
ATGTCTGGGGTGCNTGCCCATCAAATGGGGGCAATGGAGCAGCAGCATGCTCACATACCAAATCTCTTGGGATATAGCAG
CAATGGAAGAAGAGCTGTGACATTGTNTGAGGTTGTAGGTGCTGATTTATTCCATTGGTNGTTTATTTGTAGTTAATTAT
GCATTATAGATTGCTCTGTAAACAGATTAAGAGGTAGCAAAAGAACCGAGTTGGTNTCGTATGGGTAGAAACTAGAANNN
NNNNNNNNNNNNNAGGAAAACAAAAGGTAGCTGCGGATTGAATTCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26685.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis