Browse Element(s) Details


Os.26719.1.S1_at

Description gb:AK122082.1
DB_XREF= gi:37991728
TID=Os.26719.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.26719 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Glucan 1,3-beta-glucosidase precursor (OJ1208D02.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121I23, full insert sequence.
FL= gb:AK060558.1 gb:AK122082.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2257011/11Cellulase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22540NANA10+11347200..11350424retrotransposon protein, putative, unclassified
LOC_Os10g22550NANA10+11351044..11356798retrotransposon protein, putative, unclassified
LOC_Os10g22560Os.46546.2.S1_x_at11/1110+11359758..11363655POT family protein, expressed
LOC_Os10g22560Os.46546.1.S1_at10/1110+11359758..11363655POT family protein, expressed
LOC_Os10g22570Os.26719.1.S1_at11/1110+11367609..11382174Cellulase containing protein, expressed
LOC_Os10g22570Os.52165.1.S1_at1/1110+11367609..11382174Cellulase containing protein, expressed
LOC_Os10g22580OsAffx.30500.1.S1_at11/1110+11385169..11386483hypothetical protein
LOC_Os10g22580Os.57008.1.S1_at1/1110+11385169..11386483hypothetical protein
LOC_Os10g22580OsAffx.32015.1.S1_at1/1110+11385169..11386483hypothetical protein
LOC_Os10g22590Os.5297.1.S1_at11/1110+11392043..11394977Pollen proteins Ole e I family protein, expressed
LOC_Os10g22590Os.3577.1.S1_x_at2/1110+11392043..11394977Pollen proteins Ole e I family protein, expressed
LOC_Os10g22600OsAffx.20436.1.S1_x_at11/1110+11400208..11401173AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26719.1.S1_at--471--5111Chr10:11368411..11368435 (25 bp)
GCACTACTACAACCTGTTCAATGAC
LOC_Os10g22570
Os.26719.1.S1_at--743--4512Chr09:18471513..18471533 (21 bp)
GCCGCAAGGCTGAGTTCAGCAACAT
NONE
Os.26719.1.S1_at--462--2771Chr10:11368301..11368323 (23 bp)
AAGAGCCCTCTCACGTTTGTTGGAG
LOC_Os10g22570
Os.26719.1.S1_at--480--2311Chr10:11367999..11368023 (25 bp)
AAAGGTTTGCGCAAGCACAGCTTGA
LOC_Os10g22570
Os.26719.1.S1_at--570--7731Chr10:11367952..11367976 (25 bp)
GGATGGGCTTACTGGAACTTCAAGA
LOC_Os10g22570
Os.26719.1.S1_at--1078--5451Chr10:11367890..11367914 (25 bp)
GAACGGGTATATCTCACTGAAAATA
LOC_Os10g22570
Os.26719.1.S1_at--1157--3131Chr10:11367850..11367874 (25 bp)
AATTCTGTCTGGTGGGTGAATACAC
LOC_Os10g22570
Os.26719.1.S1_at--329--5131Chr10:11367813..11367837 (25 bp)
GCAAAGGCCAGAAGCCCAGAACTGT
LOC_Os10g22570
Os.26719.1.S1_at--353--151Chr10:11367710..11367734 (25 bp)
ATTACGGCCAATAAATCAGTTCTGT
LOC_Os10g22570
Os.26719.1.S1_at--910--3071Chr10:11367697..11367721 (25 bp)
AATCAGTTCTGTTAGCCAGGTGGAA
LOC_Os10g22570
Os.26719.1.S1_at--826--3531Chr10:11367667..11367691 (25 bp)
CATCCAGATGCATGCTTGTATTATA
LOC_Os10g22570
Target Sequence 
GCACTACTACAACCTGTTCAATGACGACACATTCAAAAATTTAAACGTAGAGCAAAACATTGAATTTGTGAAGAACAGCC
GCAAGGCTGAGTTCAGCAACATCANNAAGCAAAAGAGCCCTCTCACGTTTGTTGGAGAATGGGNGGCAGAGTGGAAGGTA
AACGGGGCATCCAAAGAGGANTACCAAAGGTTTGCGCAAGCACAGCTTGATGTATATGGAAGAGCTACCTTCGGATGGGC
TTACTGGAACTTCAAGAACGTCAATAACCATTGGAGCTTGGAATGGATGATCAAGAACGGGTATATCTCACTGAAAATAT
AGAAATAGTGCCATAATTCTGTCTGGTGGGTGAATACACATTACACCTAATGCAAAGGCCAGAAGCCCAGAACTGTAATA
ATGATTTTCCANTATCTAAAACGAAGTATCAATCGGGTTAACACGAACTAGAATAAGTCTGTAAATCTTGTTTAATTACG
GCCAATAAATCAGTTCTGTTAGCCAGGTGGAAGCATGCATCCAGATGCATGCTTGTATTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26719.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis