Browse Element(s) Details


Os.26725.1.S1_at

Description gb:AK066002.1
DB_XREF= gi:32976020
TID=Os.26725.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.26725 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-042-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050B10, full insert sequence.
FL= gb:AK066002.1 gb:AK099328.1 gb:AK104845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2572010/11Hepatocellular carcinoma-associated antigen 59 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25670OsAffx.25226.1.S1_at11/113+14673191..14675448hypothetical protein
LOC_Os03g25680Os.55337.1.S1_at11/113+14676898..14677686expressed protein
LOC_Os03g25690OsAffx.21870.2.S1_x_at3/113+14679585..14680779hypothetical protein
LOC_Os03g25690OsAffx.21870.3.S1_x_at3/113+14679585..14680779hypothetical protein
LOC_Os03g25690OsAffx.21870.1.S1_at1/113+14679585..14680779hypothetical protein
LOC_Os03g25700OsAffx.13030.1.S1_x_at11/113+14687364..14691474hypothetical protein
LOC_Os03g25710OsAffx.29692.1.S1_at11/113+14695398..14698160hypothetical protein
LOC_Os03g25720Os.26725.1.S1_at10/113+14699870..14704030Hepatocellular carcinoma-associated antigen 59 family protein, expressed
LOC_Os03g25750Os.52886.1.S1_at11/113+14707574..14717111expressed protein
LOC_Os03g25750Os.37024.1.S1_s_at1/113+14707574..14717111expressed protein
LOC_Os03g25760OsAffx.25227.1.S1_at11/113+14717901..14720405calmodulin-binding family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26725.1.S1_at--999--1231Chr03:14700638..14700662 (25 bp)
AGTTGTTGCTTGAGCGTTTCCGCAA
LOC_Os03g25720
Os.26725.1.S1_at--1065--2231Chr03:14700606..14700630 (25 bp)
AAATTCCGTGTCATGCGCAGATAAC
LOC_Os03g25720
Os.26725.1.S1_at--928--6331Chr03:14700567..14700591 (25 bp)
GATGCTAACTTATGCTATTTCCTTT
LOC_Os03g25720
Os.26725.1.S1_at--224--1111Chr03:14700526..14700550 (25 bp)
AGTGTGACCACATGATGGCCCTCTA
LOC_Os03g25720
Os.26725.1.S1_at--738--8451Chr03:14700511..14700535 (25 bp)
TGGCCCTCTATACATCGGTTGATTT
LOC_Os03g25720
Os.26725.1.S1_at--651--8491Chr03:14700458..14700482 (25 bp)
TGGCTCATCATGTTATAGGCGTATC
LOC_Os03g25720
Os.26725.1.S1_at--892--3031Chr03:14700365..14700389 (25 bp)
AATCCAGGATCTCGTTTCTCTCTTT
LOC_Os03g25720
Os.26725.1.S1_at--31--8891Chr03:14700270..14700294 (25 bp)
TGAGGCTTACCTTCCATGCTTATCA
LOC_Os03g25720
Os.26725.1.S1_at--963--9071Chr03:14700254..14700278 (25 bp)
TGCTTATCATTTCTGCTGCTTACAC
LOC_Os03g25720
Os.26725.1.S1_at--678--9131Chr03:14700221..14700245 (25 bp)
TGCGGCTTGCACCTTATTACTGAAA
LOC_Os03g25720
Os.26725.1.S1_at--638--10771NONE
TTGATGTGTGCCCTTCTGAAACAAG
NONE
Target Sequence 
AGTTGTTGCTTGAGCGTTTCCGCAAGCGTGAAAAATTCCGTGTCATGCGCAGATAACATGAAATGGAATAGGATGCTAAC
TTATGCTATTTCCTTTAAAGGGCAAGCGTGTCAGTGTGACCACATGATGGCCCTCTATACATCGGTTGATTTTGGCTTTT
GCTTCTAAAGCCAGTGTCCATGGCTCATCATGTTATAGGCGTATCTTCGAAGCATTTGGGAAAATTGGACAGGTCTTCAT
GAAACTGATCAATATTGTTCTGTACTGAGCAGCAATCCAGGATCTCGTTTCTCTCTTTTCTTTAAAACTGCTGGTTCAAC
CATGGATAAATTGCCAATGATCTCAGATATGCCTTTCCATCCCGATCCTGAGGCTTACCTTCCATGCTTATCATTTCTGC
TGCTTACACAACCACCTTGCGGCTTGCACCTTATTACTGAAAATATTTCCTGGATATAAGCAAGCACTGGCAATGTACCT
TATGTTATATTTTCATCAGAAACACTCAGCTTTGTTGATGTGTGCCCTTCTGAAACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis