Browse Element(s) Details


Os.26728.1.S1_a_at

Description gb:AK069166.1
DB_XREF= gi:32979190
TID=Os.26728.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26728 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0091N21.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007G19, full insert sequence.
FL= gb:AK069166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3655011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36500Os.7756.2.S1_x_at11/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36500Os.7756.2.S1_at11/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36500Os.7756.1.S1_at10/1110+19200479..19202642pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g36510OsAffx.30486.1.S1_at1/1110+19204322..19206481hypothetical protein
LOC_Os10g36520Os.46807.1.S1_at11/1110+19209997..19210891expressed protein
LOC_Os10g36530Os.27528.1.S1_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.27528.1.S1_x_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.54568.1.S1_x_at11/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36530Os.54568.1.S1_at7/1110+19211723..19219457MutS domain V family protein, expressed
LOC_Os10g36550Os.26728.1.S1_a_at11/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.2.S1_x_at11/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.2.S1_at11/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.3.S1_x_at10/1110+19225446..19228841expressed protein
LOC_Os10g36550Os.26728.3.S1_at1/1110+19225446..19228841expressed protein
LOC_Os10g36580OsAffx.20211.1.S1_at10/1110+19239001..19239689hypothetical protein
LOC_Os10g36590OsAffx.15595.1.S1_at1/1110+19245240..19248197retrotransposon, putative, centromere-specific
LOC_Os10g36600OsAffx.10957.1.S1_x_at1/1110+19250845..19251132hypothetical protein
LOC_Os10g36600OsAffx.10957.1.S1_at1/1110+19250845..19251132hypothetical protein
LOC_Os10g36610NANA10+19253665..19253934hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26728.1.S1_a_at--800--9311Chr10:19226999..19227023 (25 bp)
TCCCAAGCCAAGTTGGAGACGGCAT
LOC_Os10g36550
Os.26728.1.S1_a_at--17--3951Chr10:19227018..19227042 (25 bp)
CGGCATGGACCTGAGCTAGAGATAA
LOC_Os10g36550
Os.26728.1.S1_a_at--77--9811Chr10:19227040..19227064 (25 bp)
TAACGAGAATCCGTCTTTTCTTGCC
LOC_Os10g36550
Os.26728.1.S1_a_at--166--8251Chr10:19227072..19227096 (25 bp)
GGCTAATGCCGTTGTTTCGACCCCT
LOC_Os10g36550
Os.26728.1.S1_a_at--326--4311Chr10:19227094..19227118 (25 bp)
CCTTTCTCCCTTTGACAGGATGGAA
LOC_Os10g36550
Os.26728.1.S1_a_at--216--5891Chr10:19227125..19227149 (25 bp)
GAGCTTCCTTCTTTATAGACTTACG
LOC_Os10g36550
Os.26728.1.S1_a_at--292--6511Chr10:19227154..19227178 (25 bp)
GATATGAGACTCTCCTTGGATGCAC
LOC_Os10g36550
Os.26728.1.S1_a_at--379--6891Chr10:19227197..19227221 (25 bp)
GTATCAGTTCTAATTTATGGGACCT
LOC_Os10g36550
Os.26728.1.S1_a_at--665--10091Chr10:19227212..19227236 (25 bp)
TATGGGACCTTGTTGTAACTCGTAA
LOC_Os10g36550
Os.26728.1.S1_a_at--409--7911Chr10:19227241..19227265 (25 bp)
GGTTGAACCGCCTATTCTGAATTGC
LOC_Os10g36550
Os.26728.1.S1_a_at--611--3071Chr10:19227281..19227305 (25 bp)
AATCATTTGATGCTATCGCTTAGAT
LOC_Os10g36550
Target Sequence 
TCCCAAGCCAAGTTGGAGACGGCATGGACCTGAGCTAGAGATAACGAGAATCCGTCTTTTCTTGCCCACAGCTGGCTAAT
GCCGTTGTTTCGACCCCTTTCTCCCTTTGACAGGATGGAACTATAAGAGCTTCCTTCTTTATAGACTTACGAAGGGATAT
GAGACTCTCCTTGGATGCACCGAATAAATGTCTATGTAGTATCAGTTCTAATTTATGGGACCTTGTTGTAACTCGTAATT
TTGGTTGAACCGCCTATTCTGAATTGCATAGTACTTTCTGATAATCATTTGATGCTATCGCTTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26728.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis