Browse Element(s) Details


Os.26743.1.S1_at

Description gb:AK102330.1
DB_XREF= gi:32987539
TID=Os.26743.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033090M14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033090M14, full insert sequence.
FL= gb:AK102330.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4103011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40980Os.10104.1.S1_at11/114+24102280..24106649Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os04g40990Os.26687.1.S1_at11/114+24106676..24109146Malate synthase, glyoxysomal, putative, expressed
LOC_Os04g41000NANA4+24115079..24115509hypothetical protein
LOC_Os04g41010NANA4+24116449..24116667hypothetical protein
LOC_Os04g41020Os.54586.1.S1_at11/114+24120514..24124686Kelch motif family protein, expressed
LOC_Os04g41030Os.26743.1.S1_at11/114+24128996..24131777Leucine Rich Repeat family protein, expressed
LOC_Os04g41040Os.6234.1.S1_s_at11/114+24133366..24136326DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed
LOC_Os04g41040Os.6234.1.S1_at10/114+24133366..24136326DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed
LOC_Os04g41050OsAffx.14227.1.S1_at11/114+24137664..24138521Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g41060OsAffx.4042.1.S1_at10/114+24140299..24141443Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os04g41070OsAffx.4043.1.S1_at11/114+24144442..24145035Zinc finger, C3HC4 type family protein
LOC_Os04g41080OsAffx.4044.1.S1_at11/114+24147057..24147641Zinc finger, C3HC4 type family protein
LOC_Os04g41090NANA4+24149452..24150583retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g41100Os.15587.2.A1_a_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.15587.1.S1_x_at11/114+24152700..24158976protein kinase family protein, putative, expressed
LOC_Os04g41100Os.50305.1.A1_at10/114+24152700..24158976protein kinase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26743.1.S1_at--747--451Chr04:24131150..24131174 (25 bp)
ATCTCGCTTTATGCCTAAATTCTGA
LOC_Os04g41030
Os.26743.1.S1_at--465--2991Chr04:24131280..24131304 (25 bp)
AATGTTTCGCTCTGTCATGTACTCA
LOC_Os04g41030
Os.26743.1.S1_at--1147--9591Chr04:24131339..24131363 (25 bp)
TCATTTGCCATCTTCTCTTTGTGAA
LOC_Os04g41030
Os.26743.1.S1_at--1073--6971Chr04:24131382..24131406 (25 bp)
GTACCTTATTCACATCCACTTAAAC
LOC_Os04g41030
Os.26743.1.S1_at--1012--2851Chr04:24131443..24131467 (25 bp)
AAGTGCGCCCTTATCAGTTCATAAT
LOC_Os04g41030
Os.26743.1.S1_at--1044--7691Chr04:24131507..24131531 (25 bp)
GGGTGTTATACTTGTCAACCTTGGA
LOC_Os04g41030
Os.26743.1.S1_at--626--1771Chr04:24131538..24131562 (25 bp)
ACCTGTGGTCACTGCTCTATATTCT
LOC_Os04g41030
Os.26743.1.S1_at--105--10871Chr04:24131587..24131611 (25 bp)
TTGGAAAATGTCACCTTCAGCCTCG
LOC_Os04g41030
Os.26743.1.S1_at--350--9671Chr04:24131603..24131627 (25 bp)
TCAGCCTCGCTTTTAGCCATTGTTT
LOC_Os04g41030
Os.26743.1.S1_at--114--6991Chr04:24131642..24131666 (25 bp)
GTACCGGTATCTTGAGTGTTATCTA
LOC_Os04g41030
Os.26743.1.S1_at--1083--10491Chr04:24131703..24131727 (25 bp)
TTCAAAGTCAGCTCTTGGTGGCAAA
LOC_Os04g41030
Target Sequence 
ATCTCGCTTTATGCCTAAATTCTGATATGACCTTCCTTCTTGGAACAACTTGCCTCCTTCCCCAATCTCCTAAGAACAAT
ATTGGCAGTGAACAAAATTAATCTTGACCAATTTATCTAAAGTTTACAGGAATGTTTCGCTCTGTCATGTACTCATGTCC
TTGAANCCTTTTTCAAGTAGCATGTTATATCATTTGCCATCTTCTCTTTGTGAATTTTCTTGATGATACCATGTACCTTA
TTCACATCCACTTAAACAATGNNGTATAAACATGATTTATCATAGTTACTATTAAGTGCGCCCTTATCAGTTCATAATTT
TTCAGTTTTGATGTCAAAATCTGTATAGCTATAAACTGGGTGTTATACTTGTCAACCTTGGACCATCTACCTGTGGTCAC
TGCTCTATATTCTGACCATACATTTGAAGCATCACGATTGGAAAATGTCACCTTCAGCCTCGCTTTTAGCCATTGTTTTC
TAATTTGGTTGTGTACCGGTATCTTGAGTGTTATCTAGTTGTCTTACTTGATGTATTGTATGCTTTCTTTGATTTCAAAG
TCAGCTCTTGGTGGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis