Browse Element(s) Details


Os.2675.2.A1_at

Description gb:AK069735.1
DB_XREF= gi:32979759
TID=Os.2675.2
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030G13, full insert sequence.
FL= gb:AK069735.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1864011/11epimerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18584OsAffx.23292.2.S1_s_at11/111+10467338..10470395WRKY DNA binding domain containing protein, expressed
LOC_Os01g18600OsAffx.23292.1.S1_at11/111+10474910..10475766expressed protein
LOC_Os01g18610NANA1+10477649..10480295retrotransposon protein, putative, LINE subclass
LOC_Os01g18620OsAffx.23293.2.S1_x_at11/111+10485726..10487772Transferase family protein
LOC_Os01g18620Os.12235.2.S1_x_at3/111+10485726..10487772Transferase family protein
LOC_Os01g18630Os.48522.1.A1_s_at11/111+10488817..10492460Aspartic proteinase precursor, putative, expressed
LOC_Os01g18630Os.3623.1.S1_at9/111+10488817..10492460Aspartic proteinase precursor, putative, expressed
LOC_Os01g18640Os.2675.2.A1_at11/111+10493480..10497721epimerase, putative, expressed
LOC_Os01g18650OsAffx.22929.2.S1_x_at11/111+10498397..10500970hAT family dimerisation domain containing protein
LOC_Os01g18660Os.3625.1.S1_at11/111+10505810..10510170Isopenicillin N epimerase, putative, expressed
LOC_Os01g18670Os.20120.1.S1_at6/111+10512501..10518060CjMDR1, putative, expressed
LOC_Os01g18670OsAffx.21918.1.S1_x_at1/111+10512501..10518060CjMDR1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2675.2.A1_at--995--7851Chr01:10496077..10496101 (25 bp)
GGTATGTTAGGATCTCACACCAAGT
LOC_Os01g18640
Os.2675.2.A1_at--445--2711Chr01:10496006..10496030 (25 bp)
AAGCTTGTTGCTGATGGATTCACCA
LOC_Os01g18640
Os.2675.2.A1_at--656--10451Chr01:10493859..10493883 (25 bp)
TTAGATGTGGATCGCCGTGACAGCC
LOC_Os01g18640
Os.2675.2.A1_at--931--4411Chr01:10493837..10493861 (25 bp)
GCCAGCGCTGCGGTGTGATCTAGAT
LOC_Os01g18640
Os.2675.2.A1_at--716--8831Chr01:10493822..10493846 (25 bp)
TGATCTAGATTTAGCCCGCCAATGG
LOC_Os01g18640
Os.2675.2.A1_at--634--8371Chr01:10493799..10493823 (25 bp)
GGCGTTGCCAGTTCATGTAGTGTAC
LOC_Os01g18640
Os.2675.2.A1_at--451--2871Chr01:10493758..10493782 (25 bp)
AAGTGTTGTATTTGCAATCCGTCCG
LOC_Os01g18640
Os.2675.2.A1_at--563--3031Chr01:10493743..10493767 (25 bp)
AATCCGTCCGTCACAATAATGCACT
LOC_Os01g18640
Os.2675.2.A1_at--547--4311Chr01:10493705..10493729 (25 bp)
CCTTACCCTCATTTTCAAGCTGTAA
LOC_Os01g18640
Os.2675.2.A1_at--962--5191Chr01:10493649..10493673 (25 bp)
GAATTGCCGCCGCTGTAGATTGAAT
LOC_Os01g18640
Os.2675.2.A1_at--434--8031Chr01:10493521..10493545 (25 bp)
GGAGCCCCTACCTCATGTAGAGATT
LOC_Os01g18640
Target Sequence 
GGTATGTTAGGATCTCACACCAAGTTTACAATGTAACGGAGGATTATGAGAAGCTGAGGGATGCTGTCAATAAGCTTGTT
GCTGATGGATTCACCAGCAGCAAGTTGCGGCCTTCGCAGAAGCAGGAAACGATGGCCTGATGAACATTGCAGCCAACCAG
CACTCTGTTGGAAGNTATGTTGTGGCCGACTACTTAGATGTGGATCGCCGTGACAGCCAGCGCTGCGGTGTGATCTAGAT
TTAGCCCGCCAATGGCGTTGCCAGTTCATGTAGTGTACTTTCAGAAACTGACAGAAGTGTTGTATTTGCAATCCGTCCGT
CACAATAATGCACTGGCATGTCTTCCCCCTTACCCTCATTTTCAAGCTGTAATGTAAGAACAACAATAATCTGAATCCAN
AGGAGAATTGCCGCCGCTGTAGATTGAATTGAATGCTGGCTACCGATGATNTNGTNANNNTGGCAATGGAATTGTGGTGA
ATCATCTTCAGAGAGATTAGGAGGGCCTGGAGCTGTGAAACATTTTGAAGCCTGGAGCCCCTACCTCATGTAGAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2675.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis