Browse Element(s) Details


Os.26757.1.A1_at

Description gb:CB665336
DB_XREF= gi:29669061
DB_XREF=OSJNEd11K18.r
CLONE=OSJNEd11K18
TID=Os.26757.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.26757 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_194237.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3196011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31910Os.31312.5.S1_x_at2/1111+18254414..18257715retrotransposon protein, putative, unclassified
LOC_Os11g31910Os.31312.2.S1_x_at2/1111+18254414..18257715retrotransposon protein, putative, unclassified
LOC_Os11g31920NANA11+18258323..18264478retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31930OsAffx.31258.1.S1_at11/1111+18267476..18267754hypothetical protein
LOC_Os11g31940Os.40244.1.S1_at10/1111+18268684..18271290GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os11g31950NANA11+18273787..18274151hypothetical protein
LOC_Os11g31960OsAffx.31257.1.S1_s_at11/1111+18279252..18287338expressed protein
LOC_Os11g31960Os.26757.1.A1_at11/1111+18279252..18287338expressed protein
LOC_Os11g31960OsAffx.31257.1.S1_at9/1111+18279252..18287338expressed protein
LOC_Os11g31970NANA11+18295970..18299793retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26757.1.A1_at--304--6171Chr11:18287076..18287100 (25 bp)
GAGGATCTGACCTAGCAGCCTCAAA
LOC_Os11g31960
Os.26757.1.A1_at--198--1371Chr11:18287089..18287113 (25 bp)
AGCAGCCTCAAACAAAGCTTGCACT
LOC_Os11g31960
Os.26757.1.A1_at--534--2351Chr11:18287102..18287126 (25 bp)
AAAGCTTGCACTGGGTCTCAGACTT
LOC_Os11g31960
Os.26757.1.A1_at--409--8631Chr11:18287113..18287137 (25 bp)
TGGGTCTCAGACTTTCAGTTTTTCC
LOC_Os11g31960
Os.26757.1.A1_at--15--4211Chr11:18287137..18287161 (25 bp)
CCCCTCTGTGATGTACATGAACCGT
LOC_Os11g31960
Os.26757.1.A1_at--878--7011Chr11:18287149..18287173 (25 bp)
GTACATGAACCGTAGAACATTACAA
LOC_Os11g31960
Os.26757.1.A1_at--829--3571Chr11:18287216..18287240 (25 bp)
CATAGTAGTCGATTGATTCTTTTTT
LOC_Os11g31960
Os.26757.1.A1_at--319--10251Chr11:18287239..18287263 (25 bp)
TTTGGTGTACATAACTTGCATCCCC
LOC_Os11g31960
Os.26757.1.A1_at--410--7751Chr11:18287242..18287266 (25 bp)
GGTGTACATAACTTGCATCCCCAAC
LOC_Os11g31960
Os.26757.1.A1_at--416--531Chr11:18287258..18287282 (25 bp)
ATCCCCAACCCAAACAGTGTTGTTG
LOC_Os11g31960
Os.26757.1.A1_at--417--6651Chr11:18287276..18287300 (25 bp)
GTTGTTGACTTGTTACAGCATCTTG
LOC_Os11g31960
Target Sequence 
GAGGATCTGACCTAGCAGCCTCAAACAAAGCTTGCACTGGGTCTCAGACTTTCAGTTTTTCCCCCTCTGTGATGTACATG
AACCGTAGAACATTACAAAAAAAGATGTTTCTTGTTTATGATTTTGAGTTTTTGTTACAACATAGTAGTCGATTGATTCT
TTTTTTGGTGTACATAACTTGCATCCCCAACCCAAACAGTGTTGTTGACTTGTTACAGCATCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26757.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis