Browse Element(s) Details


OsAffx.31258.1.S1_at

Description tigr:9639.m02900
TID=OsAffx.31258.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3193011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31890Os.49438.1.S2_at11/1111+18239404..18245778NLI interacting factor-like phosphatase family protein, expressed
LOC_Os11g31890Os.49438.1.S1_at10/1111+18239404..18245778NLI interacting factor-like phosphatase family protein, expressed
LOC_Os11g31900OsAffx.19111.1.S1_s_at11/1111+18249803..18251900Acyl carrier protein 2, chloroplast precursor, putative, expressed
LOC_Os11g31910Os.31312.5.S1_x_at2/1111+18254414..18257715retrotransposon protein, putative, unclassified
LOC_Os11g31910Os.31312.2.S1_x_at2/1111+18254414..18257715retrotransposon protein, putative, unclassified
LOC_Os11g31920NANA11+18258323..18264478retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31930OsAffx.31258.1.S1_at11/1111+18267476..18267754hypothetical protein
LOC_Os11g31940Os.40244.1.S1_at10/1111+18268684..18271290GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os11g31950NANA11+18273787..18274151hypothetical protein
LOC_Os11g31960OsAffx.31257.1.S1_s_at11/1111+18279252..18287338expressed protein
LOC_Os11g31960Os.26757.1.A1_at11/1111+18279252..18287338expressed protein
LOC_Os11g31960OsAffx.31257.1.S1_at9/1111+18279252..18287338expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31258.1.S1_at--427--4211Chr11:18267561..18267585 (25 bp)
CCGCCTCCACAGAACACTTGAGGAA
LOC_Os11g31930
OsAffx.31258.1.S1_at--1070--8611Chr11:18267613..18267637 (25 bp)
TGGTGGTCCCCGATCAGTAGCTCTG
LOC_Os11g31930
OsAffx.31258.1.S1_at--396--7251Chr11:18267618..18267642 (25 bp)
GTCCCCGATCAGTAGCTCTGAGGCA
LOC_Os11g31930
OsAffx.31258.1.S1_at--221--411Chr11:18267625..18267649 (25 bp)
ATCAGTAGCTCTGAGGCAGGGTCTT
LOC_Os11g31930
OsAffx.31258.1.S1_at--349--10011Chr11:18267630..18267654 (25 bp)
TAGCTCTGAGGCAGGGTCTTGTCGC
LOC_Os11g31930
OsAffx.31258.1.S1_at--178--8891Chr11:18267636..18267660 (25 bp)
TGAGGCAGGGTCTTGTCGCCGCCTT
LOC_Os11g31930
OsAffx.31258.1.S1_at--1003--5811Chr11:18267667..18267691 (25 bp)
GACCTCCCATATCAGGTCCGGGATG
LOC_Os11g31930
OsAffx.31258.1.S1_at--156--4191Chr11:18267672..18267696 (25 bp)
CCCATATCAGGTCCGGGATGCGCAG
LOC_Os11g31930
OsAffx.31258.1.S1_at--1122--951Chr11:18267695..18267719 (25 bp)
AGGAGCCGCATCTATTTCCAGGATG
LOC_Os11g31930
OsAffx.31258.1.S1_at--867--5871Chr11:18267697..18267721 (25 bp)
GAGCCGCATCTATTTCCAGGATGAA
LOC_Os11g31930
OsAffx.31258.1.S1_at--37--4511Chr11:18267699..18267723 (25 bp)
GCCGCATCTATTTCCAGGATGAAGA
LOC_Os11g31930
Target Sequence 
CCGCCTCCACAGAACACTTGAGGAAGAGAAGGCGAATTGGAGAGGAGTGCGGTGGTGGTCCCCGATCAGTAGCTCTGAGG
CAGGGTCTTGTCGCCGCCTTCACCTCGACCTCCCATATCAGGTCCGGGATGCGCAGGAGCCGCATCTATTTCCAGGATGA
AGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis