Browse Element(s) Details


Os.49438.1.S2_at

Description gb:AK100943.1
DB_XREF= gi:32986152
TID=Os.49438.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49438 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034K06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138E17, full insert sequence.
FL= gb:AK066746.1 gb:AK100943.1 gb:AK101343.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3189011/11NLI interacting factor-like phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31840OsAffx.19542.3.S1_x_at3/1111+18209111..18214777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g31840OsAffx.21754.1.S1_x_at2/1111+18209111..18214777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g31840OsAffx.9949.1.S1_at1/1111+18209111..18214777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g31850OsAffx.19113.1.S1_at11/1111+18217074..18217733hypothetical protein
LOC_Os11g31860Os.54774.1.S1_at2/1111+18221305..18223528retrotransposon, putative, centromere-specific
LOC_Os11g31860Os.54774.1.S1_x_at2/1111+18221305..18223528retrotransposon, putative, centromere-specific
LOC_Os11g31870NANA11+18225427..18226635retrotransposon protein, putative, unclassified
LOC_Os11g31880OsAffx.19112.1.S1_at11/1111+18227666..18231752Fructose-2,6-bisphosphatase, putative
LOC_Os11g31890Os.49438.1.S2_at11/1111+18239404..18245778NLI interacting factor-like phosphatase family protein, expressed
LOC_Os11g31890Os.49438.1.S1_at10/1111+18239404..18245778NLI interacting factor-like phosphatase family protein, expressed
LOC_Os11g31900OsAffx.19111.1.S1_s_at11/1111+18249803..18251900Acyl carrier protein 2, chloroplast precursor, putative, expressed
LOC_Os11g31910Os.31312.5.S1_x_at2/1111+18254414..18257715retrotransposon protein, putative, unclassified
LOC_Os11g31910Os.31312.2.S1_x_at2/1111+18254414..18257715retrotransposon protein, putative, unclassified
LOC_Os11g31920NANA11+18258323..18264478retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31930OsAffx.31258.1.S1_at11/1111+18267476..18267754hypothetical protein
LOC_Os11g31940Os.40244.1.S1_at10/1111+18268684..18271290GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008420molecular_functionCTD phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49438.1.S2_at--705--3571Chr11:18239969..18239993 (25 bp)
CATTTTTGGTTGCAGTCCTAGGTCC
LOC_Os11g31890
Os.49438.1.S2_at--1044--1391Chr11:18239900..18239924 (25 bp)
AGACTACTCCGTGGTGGCTTGCTGG
LOC_Os11g31890
Os.49438.1.S2_at--322--1091Chr11:18239847..18239871 (25 bp)
AGTGGCATGTCGACTGGCAAGAGCA
LOC_Os11g31890
Os.49438.1.S2_at--1121--1631Chr11:18239806..18239830 (25 bp)
AGCGATACTGCTTTGGACTGTGTCT
LOC_Os11g31890
Os.49438.1.S2_at--1062--7151Chr11:18239785..18239809 (25 bp)
GTCTCTGTGTATTCATGTGGCTGTA
LOC_Os11g31890
Os.49438.1.S2_at--370--6671Chr11:18239613..18239637 (25 bp)
GTTGCGACAGCGGAGAATTTCCCTT
LOC_Os11g31890
Os.49438.1.S2_at--432--5211Chr11:18239599..18239623 (25 bp)
GAATTTCCCTTGTTGGTTGAGGCTA
LOC_Os11g31890
Os.49438.1.S2_at--726--6651Chr11:18239584..18239608 (25 bp)
GTTGAGGCTATACCTTTCTTCTTGT
LOC_Os11g31890
Os.49438.1.S2_at--712--3651Chr11:18239567..18239591 (25 bp)
CTTCTTGTGCCAACTTGAGGAGTCA
LOC_Os11g31890
Os.49438.1.S2_at--792--4831Chr11:18239478..18239502 (25 bp)
GCTCACAGGGAGCTCATGCTGAAAA
LOC_Os11g31890
Os.49438.1.S2_at--222--10471Chr11:18239453..18239477 (25 bp)
TTACTACTACTAACTCGGATGGGTG
LOC_Os11g31890
Target Sequence 
CATTTTTGGTTGCAGTCCTAGGTCCCTGCCTCTTTGCTGCAGTCCTGCCAGGCTCCTACTACTAGCCACAGACTACTCCG
TGGTGGCTTGCTGGTAGCAGTCNCCCATCGAGACCAGGTGAGAGTGGCATGTCGACTGGCAAGAGCAGCAGGCAAGGAGN
AGGAGCGATACTGCTTTGGACTGTGTCTCTGTGTATTCATGTGGCTGTAATANTGCAGCTGCCGATTCCTTCCNNNNNNN
NNNNNNNNNNNNNNAAANNNACNNGNNNNNGGNCNCNNNANNNNGCTNNNNCCTCTCTTCATCAAAAGAGATGAGGAGGG
TTCAGGGAGAGGGCATATGTACTATGCAGGATTCATGTTGCGACAGCGGAGAATTTCCCTTGTTGGTTGAGGCTATACCT
TTCTTCTTGTGCCAACTTGAGGAGTCAATGGGTGTGGCAGAAGAAGAACGTGGAAGATGTGGTTGGTTTGGTGAACAACT
GTAAGAGGAGGGCTCACAGGGAGCTCATGCTGAAAATTACTACTACTAACTCGGATGGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49438.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis