Browse Element(s) Details


OsAffx.19112.1.S1_at

Description tigr:9639.m02907
TID=OsAffx.19112.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3188011/11Fructose-2,6-bisphosphatase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31830Os.41695.15.S1_s_at11/1111+18203675..18207787Transposable element protein, putative, MuDR
LOC_Os11g31830Os.41695.3.S1_x_at10/1111+18203675..18207787Transposable element protein, putative, MuDR
LOC_Os11g31830Os.41695.2.S1_x_at10/1111+18203675..18207787Transposable element protein, putative, MuDR
LOC_Os11g31830Os.41695.5.S1_x_at9/1111+18203675..18207787Transposable element protein, putative, MuDR
LOC_Os11g31830Os.41695.4.S1_x_at1/1111+18203675..18207787Transposable element protein, putative, MuDR
LOC_Os11g31840OsAffx.19542.3.S1_x_at3/1111+18209111..18214777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g31840OsAffx.21754.1.S1_x_at2/1111+18209111..18214777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g31840OsAffx.9949.1.S1_at1/1111+18209111..18214777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g31850OsAffx.19113.1.S1_at11/1111+18217074..18217733hypothetical protein
LOC_Os11g31860Os.54774.1.S1_at2/1111+18221305..18223528retrotransposon, putative, centromere-specific
LOC_Os11g31860Os.54774.1.S1_x_at2/1111+18221305..18223528retrotransposon, putative, centromere-specific
LOC_Os11g31870NANA11+18225427..18226635retrotransposon protein, putative, unclassified
LOC_Os11g31880OsAffx.19112.1.S1_at11/1111+18227666..18231752Fructose-2,6-bisphosphatase, putative
LOC_Os11g31890Os.49438.1.S2_at11/1111+18239404..18245778NLI interacting factor-like phosphatase family protein, expressed
LOC_Os11g31890Os.49438.1.S1_at10/1111+18239404..18245778NLI interacting factor-like phosphatase family protein, expressed
LOC_Os11g31900OsAffx.19111.1.S1_s_at11/1111+18249803..18251900Acyl carrier protein 2, chloroplast precursor, putative, expressed
LOC_Os11g31910Os.31312.5.S1_x_at2/1111+18254414..18257715retrotransposon protein, putative, unclassified
LOC_Os11g31910Os.31312.2.S1_x_at2/1111+18254414..18257715retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19112.1.S1_at--431--7951Chr11:18231197..18231221 (25 bp)
GGATAGCACTCAGCCAGATTTCTCA
LOC_Os11g31880
OsAffx.19112.1.S1_at--1131--6091Chr11:18231234..18231258 (25 bp)
GAGTCTCTCAGGCAGGTACAGTTTC
LOC_Os11g31880
OsAffx.19112.1.S1_at--847--8171Chr11:18231266..18231290 (25 bp)
GGAATTCCTTAATCAGACAGTCGTA
LOC_Os11g31880
OsAffx.19112.1.S1_at--414--2891Chr11:18231345..18231369 (25 bp)
AAGGGTCTGTCTCGGCAAAGTTCCA
LOC_Os11g31880
OsAffx.19112.1.S1_at--120--2831Chr11:18231362..18231386 (25 bp)
AAGTTCCACCAATTCTGTCCAAGAT
LOC_Os11g31880
OsAffx.19112.1.S1_at--905--3611Chr11:18231394..18231418 (25 bp)
CTTGGGATTTGCTTTACAGGCTCAA
LOC_Os11g31880
OsAffx.19112.1.S1_at--1152--2411Chr11:18231450..18231474 (25 bp)
AAAAGCCGGCTTCAGTTTGTCACTT
LOC_Os11g31880
OsAffx.19112.1.S1_at--663--5991Chr11:18231486..18231510 (25 bp)
GAGACTGAGGATGACTTCTCACCAA
LOC_Os11g31880
OsAffx.19112.1.S1_at--1103--651Chr11:18231538..18231562 (25 bp)
ATGAAGCAAATCTAGCACCCTCGGT
LOC_Os11g31880
OsAffx.19112.1.S1_at--713--4711Chr11:18231612..18231636 (25 bp)
GCTGGCGTGCTGGATTGCAATCCTA
LOC_Os11g31880
OsAffx.19112.1.S1_at--370--5351Chr11:18231660..18231684 (25 bp)
GAAGATTCCTCCATTACAGTTCTTG
LOC_Os11g31880
Target Sequence 
GGATAGCACTCAGCCAGATTTCTCAGCGCCTGCTGGTGAGTCTCTCAGGCAGGTACAGTTTCGGATGATGGAATTCCTTA
ATCAGACAGTCGTACGGTTACCAGAAAAGGTGGCAATGGGGGACTCACTATCACAACAAAATGAGGCGAAGGGTCTGTCT
CGGCAAAGTTCCACCAATTCTGTCCAAGATGGTCCCCCTTGGGATTTGCTTTACAGGCTCAATCGGCATAGCCTCCAAAG
GAAAAAATCTGGGAAAAGCCGGCTTCAGTTTGTCACTTCAGGCGACAATGAGACTGAGGATGACTTCTCACCAAAAGAAA
TAAATCAAAGGCATATCCTTCATGAAGCAAATCTAGCACCCTCGGTCACCTCCATTGCAATTTTCAGTCACGCAACTCCC
ATCCGATGCCTCGTTGCTGGCGTGCTGGATTGCAATCCTATGATATCCCAGAGAATTTGCATTGAAGATTCCTCCATTAC
AGTTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis