Browse Element(s) Details


OsAffx.19111.1.S1_s_at

Description tigr:9639.m02905
TID=OsAffx.19111.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=acyl carrier protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3190011/11Acyl carrier protein 2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31870NANA11+18225427..18226635retrotransposon protein, putative, unclassified
LOC_Os11g31880OsAffx.19112.1.S1_at11/1111+18227666..18231752Fructose-2,6-bisphosphatase, putative
LOC_Os11g31890Os.49438.1.S2_at11/1111+18239404..18245778NLI interacting factor-like phosphatase family protein, expressed
LOC_Os11g31890Os.49438.1.S1_at10/1111+18239404..18245778NLI interacting factor-like phosphatase family protein, expressed
LOC_Os11g31900OsAffx.19111.1.S1_s_at11/1111+18249803..18251900Acyl carrier protein 2, chloroplast precursor, putative, expressed
LOC_Os11g31910Os.31312.5.S1_x_at2/1111+18254414..18257715retrotransposon protein, putative, unclassified
LOC_Os11g31910Os.31312.2.S1_x_at2/1111+18254414..18257715retrotransposon protein, putative, unclassified
LOC_Os11g31920NANA11+18258323..18264478retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31930OsAffx.31258.1.S1_at11/1111+18267476..18267754hypothetical protein
LOC_Os11g31940Os.40244.1.S1_at10/1111+18268684..18271290GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os11g31950NANA11+18273787..18274151hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0009416biological_processresponse to light stimulus
GO:0000036molecular_functionacyl carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19111.1.S1_s_at--584--6191Chr11:18250225..18250249 (25 bp)
GAGGACAACGCCCAGAGCATCACCA
LOC_Os11g31900
OsAffx.19111.1.S1_s_at--666--1731Chr11:18250090..18250114 (25 bp)
ACCATCGCCACTTCTGTTTGATGAA
LOC_Os11g31900
OsAffx.19111.1.S1_s_at--749--5991Chr11:18250062..18250086 (25 bp)
GAGACGTCAGTCTAGCTAGCTCGAG
LOC_Os11g31900
OsAffx.19111.1.S1_s_at--262--1591Chr11:18250045..18250069 (25 bp)
AGCTCGAGTAGCACATTTGTCATCA
LOC_Os11g31900
OsAffx.19111.1.S1_s_at--92--2831Chr11:18250015..18250039 (25 bp)
AAGTTGATTCTTTGCGCTTCTAGTC
LOC_Os11g31900
OsAffx.19111.1.S1_s_at--832--4571Chr11:18250002..18250026 (25 bp)
GCGCTTCTAGTCATCGATCGGTGTG
LOC_Os11g31900
OsAffx.19111.1.S1_s_at--366--4051Chr11:18249988..18250012 (25 bp)
CGATCGGTGTGTATTTGCGTGTAAT
LOC_Os11g31900
OsAffx.19111.1.S1_s_at--828--3131Chr11:18249956..18249980 (25 bp)
AATTTTGTCACTTAGGTTGCTCGAT
LOC_Os11g31900
OsAffx.19111.1.S1_s_at--822--9091Chr11:18249939..18249963 (25 bp)
TGCTCGATTGATTGCTACTACTAGT
LOC_Os11g31900
OsAffx.19111.1.S1_s_at--426--6831Chr11:18249910..18249934 (25 bp)
GTTTACTTATGTACTTTTGCTGCCG
LOC_Os11g31900
OsAffx.19111.1.S1_s_at--406--1491Chr11:18249833..18249857 (25 bp)
AGCAAAGTAATGTCTGCCTGGCCAA
LOC_Os11g31900
Target Sequence 
GAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGCGGCGGCGGCAA
GCCCCCCGCCGCCGCCTGAATCTGATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTGATGAA
GAAGAGACGTCAGTCTAGCTAGCTCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTCATCGA
TCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTAGGTTGCTCGATTGATTGCTACTACTAGTACTAGTTTA
CTTATGTACTTTTGCTGCCGTTTTTTTTTTGTTCGGTACAATTTTAAATTTTAGATGATGGGGTTTTCATAAAGCAAAGT
AATGTCTGCCTGGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19111.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis