Browse Element(s) Details


OsAffx.31257.1.S1_at

Description tigr:9639.m02897
TID=OsAffx.31257.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161562 putative protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g319609/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31910Os.31312.5.S1_x_at2/1111+18254414..18257715retrotransposon protein, putative, unclassified
LOC_Os11g31910Os.31312.2.S1_x_at2/1111+18254414..18257715retrotransposon protein, putative, unclassified
LOC_Os11g31920NANA11+18258323..18264478retrotransposon protein, putative, unclassified, expressed
LOC_Os11g31930OsAffx.31258.1.S1_at11/1111+18267476..18267754hypothetical protein
LOC_Os11g31940Os.40244.1.S1_at10/1111+18268684..18271290GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os11g31950NANA11+18273787..18274151hypothetical protein
LOC_Os11g31960OsAffx.31257.1.S1_s_at11/1111+18279252..18287338expressed protein
LOC_Os11g31960Os.26757.1.A1_at11/1111+18279252..18287338expressed protein
LOC_Os11g31960OsAffx.31257.1.S1_at9/1111+18279252..18287338expressed protein
LOC_Os11g31970NANA11+18295970..18299793retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31257.1.S1_at--984--3751Chr11:18284225..18284380 (25 bp)
CTCTTCCCTTTGAGTGATGATTTGG
LOC_Os11g31960
OsAffx.31257.1.S1_at--974--3631Chr11:18284227..18284382 (25 bp)
CTTCCCTTTGAGTGATGATTTGGAA
LOC_Os11g31960
OsAffx.31257.1.S1_at--59--3711Chr11:18284686..18285115 (25 bp)
CTAGTAGACCCAGATCTCAGCAAGG
LOC_Os11g31960
OsAffx.31257.1.S1_at--158--10751NONE
TTGTTCAAGCAGGAAGGAATTACCA
NONE
OsAffx.31257.1.S1_at--421--4531NONE
GCAGGAAGGAATTACCAACTACAAC
NONE
OsAffx.31257.1.S1_at--1046--8191Chr11:18285859..18285883 (25 bp)
GGAAGGAATTACCAACTACAACATT
LOC_Os11g31960
OsAffx.31257.1.S1_at--722--8211Chr11:18285863..18285887 (25 bp)
GGAATTACCAACTACAACATTGTGC
LOC_Os11g31960
OsAffx.31257.1.S1_at--389--2511Chr11:18285878..18286042 (25 bp)
AACATTGTGCAAAACGCATGGCTCG
LOC_Os11g31960
OsAffx.31257.1.S1_at--343--3611Chr11:18285880..18286044 (25 bp)
CATTGTGCAAAACGCATGGCTCGTA
LOC_Os11g31960
OsAffx.31257.1.S1_at--1056--10811Chr11:18285882..18286046 (25 bp)
TTGTGCAAAACGCATGGCTCGTATA
LOC_Os11g31960
OsAffx.31257.1.S1_at--333--8691Chr11:18285883..18286047 (25 bp)
TGTGCAAAACGCATGGCTCGTATAT
LOC_Os11g31960
Target Sequence 
CTCTTCCCTTTGAGTGATGATTTGGAAGACACAGAAAGGTTTGTTCATGAGTTGACAGTAACAGCTGGAGAAGGCAACAT
AGAAACCATGCTTTCTGTTGATAAAGGGCTTCAAGAACTAGCTTTCTTGAAGGTTGAGGATGCTGTTCTTATTGCTCTTG
CCCATCATCATCGTCCTAATGTTGCTGAACTAGTAGACCCAGATCTCAGCAAGGAGGAAGAGGAAGATGTATTGTTCAAG
CAGGAAGGAATTACCAACTACAACATTGTGCAAAACGCATGGCTCGTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis