Browse Element(s) Details


Os.26791.1.S1_a_at

Description gb:AK065691.1
DB_XREF= gi:32975709
TID=Os.26791.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26791 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (OSJNBb0009C07.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042A17, full insert sequence.
FL= gb:AK061320.1 gb:AK065691.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1087011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10830NANA10+5757049..5763144retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10840OsAffx.21897.5.S1_x_at6/1110+5763460..5766401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10849OsAffx.20657.1.S1_at5/1110+5770148..5770375hypothetical protein
LOC_Os10g10860OsAffx.18211.1.S1_x_at11/1110+5777639..5779653hypothetical protein
LOC_Os10g10870Os.26791.1.S1_a_at11/1110+5784178..5785245protein kinase family protein, putative, expressed
LOC_Os10g10880OsAffx.30385.1.S1_at11/1110+5790565..5794073hypothetical protein
LOC_Os10g10890OsAffx.8405.1.S1_at10/1110+5795045..5796811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10904NANA10+5804858..5805160retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10920OsAffx.22947.2.S1_x_at10/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10920OsAffx.22947.1.S1_x_at9/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10920OsAffx.22947.3.S1_x_at6/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10920OsAffx.22947.5.S1_x_at1/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26791.1.S1_a_at--224--7751Chr10:5784658..5784682 (25 bp)
GGTGTGCTATGTGGCTCCTGAATAC
LOC_Os10g10870
Os.26791.1.S1_a_at--979--9131Chr10:5784710..5784734 (25 bp)
TGCGATATCTATAGCTACGGTGTCT
LOC_Os10g10870
Os.26791.1.S1_a_at--530--9931Chr10:5784725..5784749 (25 bp)
TACGGTGTCTTGCTACTGGTACTTA
LOC_Os10g10870
Os.26791.1.S1_a_at--464--1951Chr10:5784739..5784763 (25 bp)
ACTGGTACTTATCTCAGGACGCCGG
LOC_Os10g10870
Os.26791.1.S1_a_at--298--8391Chr10:5784823..5784847 (25 bp)
GGCGAAACATCTTGCGCGCGTGAGC
LOC_Os10g10870
Os.26791.1.S1_a_at--340--4651Chr10:5784840..5784864 (25 bp)
GCGTGAGCCGCTTGATTGATCTTGT
LOC_Os10g10870
Os.26791.1.S1_a_at--231--10791Chr10:5784855..5784879 (25 bp)
TTGATCTTGTTGATCCAGCCCTACA
LOC_Os10g10870
Os.26791.1.S1_a_at--21--3391Chr10:5784870..5784894 (25 bp)
CAGCCCTACAGGATGTGAACCGTGA
LOC_Os10g10870
Os.26791.1.S1_a_at--884--10331Chr10:5784901..5784925 (25 bp)
TTTACTCTGCATTACAGTCGCACTC
LOC_Os10g10870
Os.26791.1.S1_a_at--514--10271Chr10:5784927..5784951 (25 bp)
TTTGCATCCAAAGGTCTCCAGCTCG
LOC_Os10g10870
Os.26791.1.S1_a_at--184--1031Chr10:5784969..5784993 (25 bp)
AGGTACTCCGAATGCTGTCTGGCGA
LOC_Os10g10870
Target Sequence 
GGTGTGCTATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCTACGGTGTCTTGC
TACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCACCCATGTCTGAGTTTGAGAAGGCAAGCCTCATA
TCGTGGGCGAAACATCTTGCGCGCGTGAGCCGCTTGATTGATCTTGTTGATCCAGCCCTACAGGATGTGAACCGTGATGA
GGTTTTACTCTGCATTACAGTCGCACTCCTTTGCATCCAAAGGTCTCCAGCTCGTCGACCATCAAGTGAGGAGGTACTCC
GAATGCTGTCTGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26791.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis