Browse Element(s) Details


Os.26798.1.S1_at

Description gb:AK067367.1
DB_XREF= gi:32977385
TID=Os.26798.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.26798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023009A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106B18, full insert sequence.
FL= gb:AK119540.1 gb:AK062059.1 gb:AK067367.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3563011/11Elongation factor TS family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35580OsAffx.19979.1.S1_at11/1112+21603754..21605381riboflavin synthase, alpha subunit family protein, expressed
LOC_Os12g35590Os.11380.1.S1_s_at11/1112+21606972..21608016expressed protein
LOC_Os12g35590Os.11380.1.S1_x_at11/1112+21606972..21608016expressed protein
LOC_Os12g35600NANA12+21610850..21611176retrotransposon protein, putative, unclassified
LOC_Os12g35610OsAffx.32039.1.S1_x_at11/1112+21614713..21620116respiratory burst oxidase homolog, putative, expressed
LOC_Os12g35620Os.26357.1.S1_at11/1112+21621504..21625750expressed protein
LOC_Os12g35630Os.26798.1.S1_at11/1112+21627212..21633147Elongation factor TS family protein, expressed
LOC_Os12g35630Os.26798.2.S1_a_at11/1112+21627212..21633147Elongation factor TS family protein, expressed
LOC_Os12g35640OsAffx.7801.1.S1_at11/1112+21633321..21635926adenosine 5'-phosphosulfate reductase 6, putative, expressed
LOC_Os12g35650Os.47463.1.S1_x_at2/1112+21640362..21645078transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35650Os.14491.2.S1_x_at2/1112+21640362..21645078transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35660NANA12+21646619..21649924transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006414biological_processtranslational elongation
GO:0005739cellular_componentmitochondrion
GO:0003676molecular_functionnucleic acid binding
GO:0003746molecular_functiontranslation elongation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26798.1.S1_at--448--7271Chr12:21632284..21632308 (25 bp)
GTCCACAGGTTGAGTATGTCTCCAT
LOC_Os12g35630
Os.26798.1.S1_at--175--8731Chr12:21632300..21632324 (25 bp)
TGTCTCCATAGAGGACATCCCAGAG
LOC_Os12g35630
Os.26798.1.S1_at--971--8091Chr12:21632366..21632390 (25 bp)
GGACCTTCAGTCCAAACCTGAGAAC
LOC_Os12g35630
Os.26798.1.S1_at--689--5351Chr12:21632399..21632423 (25 bp)
GAAGATCGTCGAAGGCCGGATATCG
LOC_Os12g35630
Os.26798.1.S1_at--1062--8531Chr12:21632449..21632473 (25 bp)
TGGAGCAGCCTTTCATCAAGGATGA
LOC_Os12g35630
Os.26798.1.S1_at--323--3571Chr12:21632528..21632552 (25 bp)
CATCAAGGTACGGAGGTTCACCCGG
LOC_Os12g35630
Os.26798.1.S1_at--385--1051Chr12:21632580..21632604 (25 bp)
AGGTGATCTCTAGTCTCAATCCTGA
LOC_Os12g35630
Os.26798.1.S1_at--414--8771Chr12:21632681..21632705 (25 bp)
TGTATCACCTGTTATATTGCTGCCC
LOC_Os12g35630
Os.26798.1.S1_at--930--9911Chr12:21632727..21632751 (25 bp)
TACTGTTGCTGGTTACAGAACACAT
LOC_Os12g35630
Os.26798.1.S1_at--636--1431Chr12:21632743..21632767 (25 bp)
AGAACACATTTTTGAGCACTCCTTT
LOC_Os12g35630
Os.26798.1.S1_at--562--10271Chr12:21632753..21632777 (25 bp)
TTTGAGCACTCCTTTGTAGATGACA
LOC_Os12g35630
Target Sequence 
GTCCACAGGTTGAGTATGTCTCCATAGAGGACATCCCAGAGAGTGTTGTCANTCAAGGAGAAAGAGATTGAGATGCAGAG
AGAGGACCTTCAGTCCAAACCTGAGAACATCAGGGAGAAGATCGTCGAAGGCCGGATATCGAAGAGGCTCGGCGTGCTGG
CCCTCCTGGAGCAGCCTTTCATCAAGGATGACAGCAAGACGGTGAAGGATCTTGTGAAGGAGACGATCGCCACCCTTGGG
GAGAACATCAAGGTACGGAGGTTCACCCGGTACACCCTTGGTGAGAACTGATTGAGGAGGTGATCTCTAGTCTCAATCCT
GACATCAGGAGTTGGGCATATTTTGATTCATGGAAGTTCATAGCTGTTGGTAGTATGATAAGTTTCCATCTGTAATTCTG
TATCACCTGTTATATTGCTGCCCCTTTTTTTCAGCTGCTGTTATTACTGTTGCTGGTTACAGAACACATTTTTGAGCACT
CCTTTGTAGATGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis