Browse Element(s) Details


Os.26818.1.S1_a_at

Description gb:AK106141.1
DB_XREF= gi:32991350
TID=Os.26818.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-G09, full insert sequence.
FL= gb:AK060922.1 gb:AK098942.1 gb:AK106141.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1965011/11PPR2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19590Os.4601.1.S1_a_at11/113+10998964..11007022Phytochrome B, putative, expressed
LOC_Os03g19600Os.11065.1.A1_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g19600Os.8570.3.S1_s_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g19610Os.18212.1.S1_at11/113+11012355..11014375Pectinesterase family protein, expressed
LOC_Os03g19620OsAffx.12939.2.S1_at11/113+11015747..11016130hypothetical protein
LOC_Os03g19630OsAffx.27626.1.S1_at11/113+11018627..11019196Myb-like DNA-binding domain containing protein
LOC_Os03g19640OsAffx.12941.1.S1_at11/113+11024800..11025308hypothetical protein
LOC_Os03g19650Os.26818.2.S1_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.1.S1_a_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.2.S2_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19660OsAffx.12942.2.S1_at11/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_at10/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_x_at8/113+11034988..11036603hypothetical protein
LOC_Os03g19670Os.51091.1.S1_at11/113+11038498..11040989GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g19680Os.27994.1.A1_at11/113+11047829..11049914enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os03g19690OsAffx.25146.1.S1_at11/113+11050827..11059946expressed protein
LOC_Os03g19690Os.7107.1.S1_x_at11/113+11050827..11059946expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26818.1.S1_a_at--436--8071Chr03:11029038..11029062 (25 bp)
GGAGCACACATTTAACCAGATGCGT
LOC_Os03g19650
Os.26818.1.S1_a_at--1075--10831Chr03:11029115..11029139 (25 bp)
TTGGCAATGCGGGTCTTTTCCATAA
LOC_Os03g19650
Os.26818.1.S1_a_at--109--7751Chr03:11029174..11029198 (25 bp)
GGTGTGCCAATGGATACAACTTTCC
LOC_Os03g19650
Os.26818.1.S1_a_at--416--2531Chr03:11029191..11029215 (25 bp)
AACTTTCCACAATGCTGTTCTCATG
LOC_Os03g19650
Os.26818.1.S1_a_at--850--831Chr03:11029246..11029270 (25 bp)
ATGGAGAGGGTCTTCATGCGCATGA
LOC_Os03g19650
Os.26818.1.S1_a_at--87--6351Chr03:11029291..11029315 (25 bp)
GATGCTACAACATACTCCATTTTGG
LOC_Os03g19650
Os.26818.1.S1_a_at--514--5731Chr03:11029341..11029365 (25 bp)
GACTGACAAGATCTATGTTCTGCAA
LOC_Os03g19650
Os.26818.1.S1_a_at--1104--9451Chr03:11029359..11029383 (25 bp)
TCTGCAACAGGAGAACCCGACTTTG
LOC_Os03g19650
Os.26818.1.S1_a_at--1127--5951Chr03:11029369..11029393 (25 bp)
GAGAACCCGACTTTGGTTCCAACTG
LOC_Os03g19650
Os.26818.1.S1_a_at--826--1971Chr03:11029390..11029414 (25 bp)
ACTGACCTTGTCCATGTGTAACTCT
LOC_Os03g19650
Os.26818.1.S1_a_at--330--7451Chr03:11029405..11029429 (25 bp)
GTGTAACTCTCACCACTGATCTGTA
LOC_Os03g19650
Target Sequence 
GGAGCACACATTTAACCAGATGCGTGCAGAGGGGATGAAGCCAGATACAAAGACATTTTGTTGTCTCATAAATGGGTTTG
GCAATGCGGGTCTTTTCCATAAGGTGGTTGGCATGGTTAAGCTGGCTGAGAGGCTTGGTGTGCCAATGGATACAACTTTC
CACAATGCTGTTCTCATGNCATGTGTAAAAGCTGAGGATTTGATGGAGATGGAGAGGGTCTTCATGCGCATGAAGCAAAT
ACAGTGTNTCCCAGATGCTACAACATACTCCATTTTGGTGGGAGCTTATCGGAAGGAAGGAATGACTGACAAGATCTATG
TTCTGCAACAGGAGAACCCGACTTTGGTTCCAACTGACCTTGTCCATGTGTAACTCTCACCACTGATCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26818.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis