Browse Element(s) Details


Os.26818.2.S1_at

Description gb:AK111530.1
DB_XREF= gi:37988193
TID=Os.26818.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013024C10, full insert sequence.
FL= gb:AK111624.1 gb:AK111530.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1965011/11PPR2, putative, expressed
LOC_Os08g081701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g238491/11expressed protein
LOC_Os01g604401/11HEAT repeat-containing protein, putative, expressed
LOC_Os03g633001/11NLI interacting factor, putative, expressed
LOC_Os07g026741/11expressed protein
LOC_Os03g427601/11IBR domain containing protein, expressed
LOC_Os11g342201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19590Os.4601.1.S1_a_at11/113+10998964..11007022Phytochrome B, putative, expressed
LOC_Os03g19600Os.11065.1.A1_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g19600Os.8570.3.S1_s_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g19610Os.18212.1.S1_at11/113+11012355..11014375Pectinesterase family protein, expressed
LOC_Os03g19620OsAffx.12939.2.S1_at11/113+11015747..11016130hypothetical protein
LOC_Os03g19630OsAffx.27626.1.S1_at11/113+11018627..11019196Myb-like DNA-binding domain containing protein
LOC_Os03g19640OsAffx.12941.1.S1_at11/113+11024800..11025308hypothetical protein
LOC_Os03g19650Os.26818.2.S1_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.1.S1_a_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.2.S2_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19660OsAffx.12942.2.S1_at11/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_at10/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_x_at8/113+11034988..11036603hypothetical protein
LOC_Os03g19670Os.51091.1.S1_at11/113+11038498..11040989GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g19680Os.27994.1.A1_at11/113+11047829..11049914enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os03g19690OsAffx.25146.1.S1_at11/113+11050827..11059946expressed protein
LOC_Os03g19690Os.7107.1.S1_x_at11/113+11050827..11059946expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000775cellular_componentchromosome, pericentric region
GO:0005634cellular_componentnucleus
GO:0005694cellular_componentchromosome
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26818.2.S1_at--196--7612Chr03:11030632..11030656 (25 bp)
GGGAATCTCGCCTAATTTCTACCCT
LOC_Os03g19650
Os.26818.2.S1_at--295--3913Chr11:14182769..14182792 (24 bp)
CTGGCACCTCAAGCTGCATATCAAT
NONE
Os.26818.2.S1_at--203--1613Chr11:14182779..14182802 (24 bp)
AGCTGCATATCAATGGCCTTTGATG
NONE
Os.26818.2.S1_at--310--7431Chr03:11030727..11030751 (25 bp)
GTGTTCAGGTATGATCACCCTCGAA
LOC_Os03g19650
Os.26818.2.S1_at--1016--6533Chr11:14182897..14182919 (23 bp)
GATTTATGCTCCCATGAGACTCTGT
NONE
Os.26818.2.S1_at--188--7051Chr03:11030809..11030833 (25 bp)
GTAAATCTCTCATAAGGATGCCAAT
LOC_Os03g19650
Os.26818.2.S1_at--76--2911Chr03:11030822..11030846 (25 bp)
AAGGATGCCAATTTTCTGTAAGTGA
LOC_Os03g19650
Os.26818.2.S1_at--777--4991Chr03:11030861..11030885 (25 bp)
GCATGGAGAGTACTCACTCCGTACT
LOC_Os03g19650
Os.26818.2.S1_at--829--601101Chr12:11123574..11123606 (25 bp)
GAGAGTTATTCATGACCCAAGGTTT
NONE
Os.26818.2.S1_at--664--5231Chr03:11031136..11031160 (25 bp)
GAATATGAGCACAGAGCACTGGGTA
LOC_Os03g19650
Os.26818.2.S1_at--747--3331Chr03:11031152..11031176 (25 bp)
CACTGGGTAGGCGTTTGCAACAAAT
LOC_Os03g19650
Target Sequence 
GGGAATCTCGCCTAATTTCTACCCTGGCACCTCAAGCTGCATATCAATGGCCTTTGATGATAACTTTCAAGGACAGGAAT
GTAGNTGAGTTTTTTGTGTTCAGGTATGATCACCCTCGAAAAAAAGGTGTCATAAATGGTTATGAGATAGTAGAGATTTA
TGCTCCCATGAGACTCTGTAAATCTCTCATAAGGATGCCAATTTTCTGTAAGTGAAAACAAGCTAAAGTGCATGGAGAGT
ACTCACTCCGTACTCGTAAAGGAAGTCGTTTTGGACAGCGACACGGTCTCCAAAACACAACTTTGACTTCTTGTTTCTAT
AAAAATATTTATTGAAAAGTGATATATGTATACTTTTATGAAAGTATTTTTCAAGACAAATCTATTCATATAACTTTTAC
ATTTTCAAACTCAACAACTTGAGAGTTATTCATGACCCAAGGTTTGATTTAAACATTGTCCTAAACGACTTACTTTACGA
GTACAGAGGGAGTATCTTTGAAAGGAATATGAGCACAGAGCACTGGGTAGGCGTTTGCAACAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26818.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis