Browse Element(s) Details


Os.26840.1.S1_at

Description gb:AK112063.1
DB_XREF= gi:37988726
TID=Os.26840.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26840 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-B05, full insert sequence.
FL= gb:AK112063.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3817011/11Notchless homolog 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38120Os.55133.1.S1_at10/1111+22103551..22105264F-box domain containing protein, expressed
LOC_Os11g38130Os.53273.1.S1_at11/1111+22109670..22111199F-box domain containing protein, expressed
LOC_Os11g38130Os.54729.1.S1_s_at3/1111+22109670..22111199F-box domain containing protein, expressed
LOC_Os11g38140Os.54729.1.S1_s_at11/1111+22113554..22115552F-box domain containing protein, expressed
LOC_Os11g38140Os.54729.1.S1_at11/1111+22113554..22115552F-box domain containing protein, expressed
LOC_Os11g38150OsAffx.19227.1.S1_at11/1111+22117879..22122784hypothetical protein
LOC_Os11g38160OsAffx.14584.1.S1_at11/1111+22124289..22125964Sugar transporter family protein, expressed
LOC_Os11g38170Os.26840.1.S1_at11/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.2.S1_x_at2/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.1.S1_a_at1/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38180Os.57086.1.S1_at11/1111+22138020..22139689F-box domain containing protein, expressed
LOC_Os11g38190OsAffx.31360.1.S1_at11/1111+22141243..22142659hypothetical protein
LOC_Os11g38200OsAffx.31361.1.S1_at11/1111+22144469..22145890F-box domain containing protein
LOC_Os11g38210OsAffx.7335.1.S1_at11/1111+22148474..22148902expressed protein
LOC_Os11g38210Os.23172.1.S1_x_at1/1111+22148474..22148902expressed protein
LOC_Os11g38220OsAffx.19229.1.S1_s_at1/1111+22150250..22150678expressed protein
LOC_Os11g38220OsAffx.7335.1.S1_at1/1111+22150250..22150678expressed protein
LOC_Os11g38230OsAffx.19228.1.S1_at11/1111+22152816..22154225F-box domain containing protein
LOC_Os11g38240OsAffx.19229.1.S1_s_at11/1111+22155870..22156521expressed protein
LOC_Os11g38250Os.54000.1.S1_at11/1111+22157130..22158828expressed protein
LOC_Os11g38260Os.27862.1.S1_at10/1111+22159158..22161018harpin binding protein 1, putative, expressed
LOC_Os11g38260Os.12799.1.S1_s_at2/1111+22159158..22161018harpin binding protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26840.1.S1_at--243--2531Chr11:22135883..22135907 (25 bp)
AACTAGGGCCGGCTGATTCTTCTGA
LOC_Os11g38170
Os.26840.1.S1_at--848--10591Chr11:22135902..22135926 (25 bp)
TTCTGACCACCCGTTAAGCTTGTTC
LOC_Os11g38170
Os.26840.1.S1_at--446--2711Chr11:22135917..22135941 (25 bp)
AAGCTTGTTCTCATGGTGGCACTAA
LOC_Os11g38170
Os.26840.1.S1_at--898--9731Chr11:22135954..22135978 (25 bp)
TCAATCGGTCACAAAGTCGGAAGCT
LOC_Os11g38170
Os.26840.1.S1_at--555--6431Chr11:22135986..22136010 (25 bp)
GATCATGGCGGTTAACTTGCAAGGT
LOC_Os11g38170
Os.26840.1.S1_at--490--8071Chr11:22136094..22136118 (25 bp)
GGAGCAATCACAACCGATTTCAGTT
LOC_Os11g38170
Os.26840.1.S1_at--107--8491Chr11:22136167..22136191 (25 bp)
TGGCTGGCCACCCAAAATAGGATTT
LOC_Os11g38170
Os.26840.1.S1_at--463--9891Chr11:22136191..22136215 (25 bp)
TACTTACATCGGTCAGGCTAGCTGT
LOC_Os11g38170
Os.26840.1.S1_at--1120--1311Chr11:22136228..22136252 (25 bp)
AGAGGCCATATCACCGAACATGCAA
LOC_Os11g38170
Os.26840.1.S1_at--634--7991Chr11:22136342..22136366 (25 bp)
GGATGAGTCTCCTTTGCTGTATTGC
LOC_Os11g38170
Os.26840.1.S1_at--926--471Chr11:22136368..22136392 (25 bp)
ATCTGACACGGGTCACTGACATATG
LOC_Os11g38170
Target Sequence 
AACTAGGGCCGGCTGATTCTTCTGACCACCCGTTAAGCTTGTTCTCATGGTGGCACTAAACATTGAACTCATCAATCGGT
CACAAAGTCGGAAGCTGGGAGTAGATCATGGCGGTTAACTTGCAAGGTTGTTCAAGAGGAGATTGATTACCTAGGAAGGA
CATACATTCAAACCATACTCCATGAAGTCAACATGCAATTNCCAATTTGTTGGAGCAATCACAACCGATTTCAGTTCAAT
GATTTGAAGGGATGTGAGCGCCATGGAAATGCAAGTTCTTCCCATGGCTGGCCACCCAAAATAGGATTTACTTACATCGG
TCAGGCTAGCTGTTAGAGACTTTTTAGAGGCCATATCACCGAACATGCAAAGGAAAACCACCATGATCAGCAAACAGTTG
TTCCTGTCCTCACATCCTGCAGTCTGCAGATAGTCTGGGTTTGGGCATATGTAATCATAGGATGAGTCTCCTTTGCTGTA
TTGCNATCTGACACGGGTCACTGACATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis