Browse Element(s) Details


Os.26857.1.S1_at

Description gb:AK102477.1
DB_XREF= gi:32987686
TID=Os.26857.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26857 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033094I09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094I09, full insert sequence.
FL= gb:AK102477.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3970011/11La domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39670NANA2+23960206..23962653retrotransposon, putative, centromere-specific, expressed
LOC_Os02g39680NANA2+23964108..23966213retrotransposon, putative, centromere-specific
LOC_Os02g39689NANA2+23967783..23968090NA
LOC_Os02g39700Os.26857.1.S1_at11/112+23974609..23980789La domain containing protein, expressed
LOC_Os02g39710Os.15757.1.S1_at11/112+23983881..23985423CONSTANS-like protein CO5, putative, expressed
LOC_Os02g39710OsAffx.11619.1.S1_at1/112+23983881..23985423CONSTANS-like protein CO5, putative, expressed
LOC_Os02g39720OsAffx.2920.1.S1_s_at11/112+23986275..23990491splicing factor, putative, expressed
LOC_Os02g39720Os.12017.1.S1_at11/112+23986275..23990491splicing factor, putative, expressed
LOC_Os02g39720OsAffx.2920.1.S1_at7/112+23986275..23990491splicing factor, putative, expressed
LOC_Os02g39730Os.11981.1.S1_x_at11/112+23992210..23994932expressed protein
LOC_Os02g39730Os.25348.1.S1_at11/112+23992210..23994932expressed protein
LOC_Os02g39740Os.27652.1.S1_at10/112+23995062..23997322Tab2 protein, putative, expressed
LOC_Os02g39750NANA2+23999619..24000970hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26857.1.S1_at--587--2351Chr02:23975812..23975836 (25 bp)
AAAGCCCGCATGTCTGCTGTATTAG
LOC_Os02g39700
Os.26857.1.S1_at--1020--1691Chr02:23975760..23975784 (25 bp)
ACCACATTGTTACCTTGGAGCCTGT
LOC_Os02g39700
Os.26857.1.S1_at--717--10331Chr02:23974898..23974922 (25 bp)
TTTAACGTCTTCACTCGACCGAGAA
LOC_Os02g39700
Os.26857.1.S1_at--914--9811Chr02:23974872..23974896 (25 bp)
TAACATGCTACGCTTACTATCGGTG
LOC_Os02g39700
Os.26857.1.S1_at--787--4891Chr02:23974861..23974885 (25 bp)
GCTTACTATCGGTGGTCTTGTATAT
LOC_Os02g39700
Os.26857.1.S1_at--90--10371Chr02:23974785..23974809 (25 bp)
TTTTTTATGCTAACCTTGTTCCAAG
LOC_Os02g39700
Os.26857.1.S1_at--1162--6671Chr02:23974768..23974792 (25 bp)
GTTCCAAGGTATACTTCCGTAATGA
LOC_Os02g39700
Os.26857.1.S1_at--414--9211Chr02:23974677..23974701 (25 bp)
TCCAAACATGCAAACCCGGAGCTGT
LOC_Os02g39700
Os.26857.1.S1_at--949--5891Chr02:23974659..23974683 (25 bp)
GAGCTGTTTCCTGCAGCGGAGCAGA
LOC_Os02g39700
Os.26857.1.S1_at--140--1371Chr02:23974637..23974661 (25 bp)
AGAGCAGCTGTCCTGACAATCTTCA
LOC_Os02g39700
Os.26857.1.S1_at--1125--3051Chr02:23974620..23974644 (25 bp)
AATCTTCAGATATCTTCACCGTCCT
LOC_Os02g39700
Target Sequence 
AAAGCCCGCATGTCTGCTGTATTAGCTGATGAAGGTGGCTTGATAGTTAAAGACCACATTGTTACCTTGGAGCCTGTGAC
TGGTGAAGCTGAGAAGGATTATTGGAATACAATACGTGGCATTCAAGGGAAATACAAGGACAATAGGAGTTACAAAGGAA
GGACTGGAAAGAGCTACAGAGGAGGAAAGCAGTTCAATGGGAAGCGAGGCCGACATTCTNGATTCCTCCGAAAAGGGTGC
GAATAAAACACAGAAGGTCGAAGCTGCTGCTTAGGCTAATTTTAACGTCTTCACTCGACCGAGAAGTAACATGCTACGCT
TACTATCGGTGGTCTTGTATATTTATTATATCAGAGACCATTTATTACCATATTTTGTGACTGTTATTGTCCATTTTTTA
TGCTAACCTTGTTCCAAGGTATACTTCCGTAATGATTAGCCTTTAGTAACGGNTTTGCCGTTTACTTTTGAATGGCTTTG
GAGGATATAACCTTGTATAGCTCCAAACATGCAAACCCGGAGCTGTTTCCTGCAGCGGAGCAGAGCAGCTGTCCTGACAA
TCTTCAGATATCTTCACCGTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis