Browse Element(s) Details


Os.26870.2.A1_x_at

Description gb:CB623213
DB_XREF= gi:29618201
DB_XREF=OSIIEa10M15.r
CLONE=OSIIEa10M15
TID=Os.26870.2
CNT=7
FEA=RNA
TIER=ConsEnd
STK=2
UG=Os.26870 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013057L06, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g176309/11Receptor-like protein kinase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17600Os.27354.1.S1_at11/119+10762251..10767262expressed protein
LOC_Os09g17610Os.50548.2.S1_x_at11/119+10767865..10769135Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g17610OsAffx.29897.1.S1_at10/119+10767865..10769135Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g17620Os.50548.3.S1_at11/119+10769144..10771860expressed protein
LOC_Os09g17630Os.26870.1.S1_at9/119+10784209..10792850Receptor-like protein kinase 2, putative, expressed
LOC_Os09g17630Os.26870.2.A1_x_at9/119+10784209..10792850Receptor-like protein kinase 2, putative, expressed
LOC_Os09g17640NANA9+10795067..10795641hypothetical protein
LOC_Os09g17650OsAffx.29898.1.S1_at11/119+10797022..10797372expressed protein
LOC_Os09g17660OsAffx.27508.94.S1_s_at11/119+10800053..10801378expressed protein
LOC_Os09g17670OsAffx.17760.1.S1_at11/119+10803555..10803809hypothetical protein
LOC_Os09g17680Os.53645.1.S1_at11/119+10809134..10811497ATP-NAD kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26870.2.A1_x_at--290--6552Chr09:10791807..10791831 (25 bp)
GATTTTGTTTATCTTCTCGATTGGG
LOC_Os09g17630
Os.26870.2.A1_x_at--959--9471Chr09:10791821..10792333 (25 bp)
TCTCGATTGGGCTTGTGTTCTACAT
LOC_Os09g17630
Os.26870.2.A1_x_at--105--2271Chr09:10792342..10792366 (25 bp)
AAATCTCCTGGAGCTGGTAGATCCA
LOC_Os09g17630
Os.26870.2.A1_x_at--58--6371Chr09:10792361..10792385 (25 bp)
GATCCAGAGTTAGGCTCCGATTACT
LOC_Os09g17630
Os.26870.2.A1_x_at--714--131Chr09:10792380..10792404 (25 bp)
ATTACTCAACGGAAGAGGCGCTCCT
LOC_Os09g17630
Os.26870.2.A1_x_at--1023--891Chr09:10792395..10792419 (25 bp)
AGGCGCTCCTCATGCTGAATGTTGC
LOC_Os09g17630
Os.26870.2.A1_x_at--42--5851Chr09:10792462..10792486 (25 bp)
GACCAAAGTTTTGAGCCTGCTTGAG
LOC_Os09g17630
Os.26870.2.A1_x_at--938--10491Chr09:10792500..10792524 (25 bp)
TTCAACCATTTCTGTCAGACCTCAG
LOC_Os09g17630
Os.26870.2.A1_x_at--238--7831Chr09:10792553..10792577 (25 bp)
GGTCAGCGCAGGAACTTCTGGCAAA
LOC_Os09g17630
Os.26870.2.A1_x_at--905--2211NONE
ACAAGCATCATCTAGCAACACCAAT
NONE
Os.26870.2.A1_x_at--867--6231NONE
GATGGTAGCCTGAGACCTTAGGTGA
NONE
Target Sequence 
GATTTTGTTTATCTTCTCGATTGGGCTTGTGTTCTACATGAGCGAGGAAATCTCCTGGAGCTGGTAGATCCAGAGTTAGG
CTCCGATTACTCAACGGAAGAGGCGCTCCTCATGCTGAATGTTGCCCTCCTGTGCACCAATGCAGCACCAACACTGAGAC
CAAAGATGACCAAAGTTTTGAGCCTGCTTGAGGGGCACACACCACTTCAACCATTTCTGTCAGACCTCAGCCTTGCTGCA
AACAGCCTGAGCTCAAGCGGTCAGCGCAGGAACTTCTGGCAAACACTAAGTGATCAGAGCCAAAGCATGACAGCAGCACA
AGCATCATCTAGCAACACCAATGAGTCATCATCTTTAGATGTTGATGGTAGCCTGAGACCTTAGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26870.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis